Hb_001069_020

Information

Type -
Description -
Location Contig1069: 67530-68634
Sequence    

Annotation

kegg
ID tcc:TCM_020504
description hypothetical protein
nr
ID CCA66153.1
description hypothetical protein [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID F4NCK1
description Putative uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1
Gene Ontology
ID GO:0003676
description hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001069_020 0.0 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
2 Hb_008277_030 0.2203211227 - - hypothetical protein CICLE_v10024419mg, partial [Citrus clementina]
3 Hb_001260_030 0.2266186966 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005731_140 0.2295428493 - - hypothetical protein JCGZ_26808 [Jatropha curcas]
5 Hb_000943_020 0.2319063655 - - 60S ribosomal protein L30, putative [Ricinus communis]
6 Hb_000120_190 0.2424757722 - - Pre-mRNA-splicing factor ini1 [Ricinus communis]
7 Hb_002482_060 0.2454246102 - - hypothetical protein CICLE_v10033884mg, partial [Citrus clementina]
8 Hb_000810_020 0.2454912004 - - -
9 Hb_002027_330 0.2456240734 - - -
10 Hb_005271_150 0.2460141874 - - PREDICTED: EKC/KEOPS complex subunit Tprkb-like [Malus domestica]
11 Hb_032531_060 0.2470128824 - - hypothetical protein PRUPE_ppa017035mg, partial [Prunus persica]
12 Hb_006198_090 0.2506004348 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
13 Hb_000436_080 0.2572268735 - - unnamed protein product [Coffea canephora]
14 Hb_002783_060 0.2575200017 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
15 Hb_006487_060 0.260220305 - - Defective in cullin neddylation protein, putative [Ricinus communis]
16 Hb_073559_010 0.2666127442 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
17 Hb_000248_030 0.2694845183 - - hypothetical protein Pmar_PMAR005331 [Perkinsus marinus ATCC 50983]
18 Hb_106005_010 0.2732468944 - - EG5651 [Manihot esculenta]
19 Hb_000117_010 0.2769169733 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like [Malus domestica]
20 Hb_006995_010 0.2772175076 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]

Gene co-expression network

sample Hb_001069_020 Hb_001069_020 Hb_008277_030 Hb_008277_030 Hb_001069_020--Hb_008277_030 Hb_001260_030 Hb_001260_030 Hb_001069_020--Hb_001260_030 Hb_005731_140 Hb_005731_140 Hb_001069_020--Hb_005731_140 Hb_000943_020 Hb_000943_020 Hb_001069_020--Hb_000943_020 Hb_000120_190 Hb_000120_190 Hb_001069_020--Hb_000120_190 Hb_002482_060 Hb_002482_060 Hb_001069_020--Hb_002482_060 Hb_000265_130 Hb_000265_130 Hb_008277_030--Hb_000265_130 Hb_000261_360 Hb_000261_360 Hb_008277_030--Hb_000261_360 Hb_073559_010 Hb_073559_010 Hb_008277_030--Hb_073559_010 Hb_000204_020 Hb_000204_020 Hb_008277_030--Hb_000204_020 Hb_032531_060 Hb_032531_060 Hb_008277_030--Hb_032531_060 Hb_000248_030 Hb_000248_030 Hb_008277_030--Hb_000248_030 Hb_001260_030--Hb_002482_060 Hb_000436_080 Hb_000436_080 Hb_001260_030--Hb_000436_080 Hb_001260_030--Hb_000120_190 Hb_007763_060 Hb_007763_060 Hb_001260_030--Hb_007763_060 Hb_001998_140 Hb_001998_140 Hb_001260_030--Hb_001998_140 Hb_006198_090 Hb_006198_090 Hb_001260_030--Hb_006198_090 Hb_005731_140--Hb_032531_060 Hb_005731_140--Hb_002482_060 Hb_106005_010 Hb_106005_010 Hb_005731_140--Hb_106005_010 Hb_124141_010 Hb_124141_010 Hb_005731_140--Hb_124141_010 Hb_034579_010 Hb_034579_010 Hb_005731_140--Hb_034579_010 Hb_000810_020 Hb_000810_020 Hb_005731_140--Hb_000810_020 Hb_001579_260 Hb_001579_260 Hb_000943_020--Hb_001579_260 Hb_029142_020 Hb_029142_020 Hb_000943_020--Hb_029142_020 Hb_108227_010 Hb_108227_010 Hb_000943_020--Hb_108227_010 Hb_025477_070 Hb_025477_070 Hb_000943_020--Hb_025477_070 Hb_000943_020--Hb_000120_190 Hb_000120_190--Hb_002482_060 Hb_010368_030 Hb_010368_030 Hb_000120_190--Hb_010368_030 Hb_175976_010 Hb_175976_010 Hb_000120_190--Hb_175976_010 Hb_166480_010 Hb_166480_010 Hb_000120_190--Hb_166480_010 Hb_000120_190--Hb_029142_020 Hb_000120_190--Hb_006198_090 Hb_002482_060--Hb_166480_010 Hb_002482_060--Hb_006198_090 Hb_002482_060--Hb_106005_010 Hb_002482_060--Hb_007763_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.15217 0 0.0390668 3.23991 0.857349 10.4157
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.57098 0.527031 3.34433 0 0.336106

CAGE analysis