Hb_001071_060

Information

Type -
Description -
Location Contig1071: 132523-140978
Sequence    

Annotation

kegg
ID tcc:TCM_016556
description Trehalose phosphatase/synthase 5 isoform 1
nr
ID XP_007040643.1
description Trehalose phosphatase/synthase 5 isoform 1 [Theobroma cacao]
swissprot
ID O23617
description Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5 OS=Arabidopsis thaliana GN=TPS5 PE=1 SV=2
trembl
ID A0A061GDN3
description Trehalose phosphatase/synthase 5 isoform 1 OS=Theobroma cacao GN=TCM_016556 PE=4 SV=1
Gene Ontology
ID GO:0003825
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02241: 132585-132851 , PASA_asmbl_02243: 134916-141350
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001071_060 0.0 - - Trehalose phosphatase/synthase 5 isoform 1 [Theobroma cacao]
2 Hb_001832_210 0.0992984719 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
3 Hb_000197_230 0.1098350446 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
4 Hb_004531_110 0.1208324729 - - PREDICTED: aquaporin TIP2-1 [Jatropha curcas]
5 Hb_064047_010 0.1303913423 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000778_020 0.132293138 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
7 Hb_002324_040 0.136663666 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
8 Hb_000997_340 0.1375795585 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
9 Hb_002671_060 0.1384756711 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
10 Hb_012727_010 0.1406888877 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
11 Hb_002324_050 0.140913332 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
12 Hb_002833_020 0.1455938706 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
13 Hb_000100_210 0.1458806382 - - PREDICTED: selenium-binding protein 1-like [Jatropha curcas]
14 Hb_001408_150 0.1463678107 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
15 Hb_001699_050 0.1464372979 transcription factor TF Family: MYB hypothetical protein POPTR_0005s11410g [Populus trichocarpa]
16 Hb_010253_020 0.1464854832 - - alcohol dehydrogenase, putative [Ricinus communis]
17 Hb_004544_090 0.1471184785 - - cytochrome P450, putative [Ricinus communis]
18 Hb_004032_250 0.147990341 - - conserved hypothetical protein [Ricinus communis]
19 Hb_106136_010 0.1496220022 - - Disease resistance protein RPS5, putative [Ricinus communis]
20 Hb_010605_010 0.1507407604 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]

Gene co-expression network

sample Hb_001071_060 Hb_001071_060 Hb_001832_210 Hb_001832_210 Hb_001071_060--Hb_001832_210 Hb_000197_230 Hb_000197_230 Hb_001071_060--Hb_000197_230 Hb_004531_110 Hb_004531_110 Hb_001071_060--Hb_004531_110 Hb_064047_010 Hb_064047_010 Hb_001071_060--Hb_064047_010 Hb_000778_020 Hb_000778_020 Hb_001071_060--Hb_000778_020 Hb_002324_040 Hb_002324_040 Hb_001071_060--Hb_002324_040 Hb_000000_110 Hb_000000_110 Hb_001832_210--Hb_000000_110 Hb_001832_210--Hb_000197_230 Hb_000997_340 Hb_000997_340 Hb_001832_210--Hb_000997_340 Hb_000220_080 Hb_000220_080 Hb_001832_210--Hb_000220_080 Hb_000085_380 Hb_000085_380 Hb_001832_210--Hb_000085_380 Hb_010605_010 Hb_010605_010 Hb_000197_230--Hb_010605_010 Hb_002833_020 Hb_002833_020 Hb_000197_230--Hb_002833_020 Hb_000100_210 Hb_000100_210 Hb_000197_230--Hb_000100_210 Hb_001391_100 Hb_001391_100 Hb_000197_230--Hb_001391_100 Hb_004531_110--Hb_001832_210 Hb_048643_010 Hb_048643_010 Hb_004531_110--Hb_048643_010 Hb_002119_070 Hb_002119_070 Hb_004531_110--Hb_002119_070 Hb_001148_040 Hb_001148_040 Hb_004531_110--Hb_001148_040 Hb_002928_120 Hb_002928_120 Hb_004531_110--Hb_002928_120 Hb_000816_050 Hb_000816_050 Hb_064047_010--Hb_000816_050 Hb_005784_020 Hb_005784_020 Hb_064047_010--Hb_005784_020 Hb_002431_090 Hb_002431_090 Hb_064047_010--Hb_002431_090 Hb_064047_010--Hb_002324_040 Hb_010381_110 Hb_010381_110 Hb_064047_010--Hb_010381_110 Hb_000976_340 Hb_000976_340 Hb_064047_010--Hb_000976_340 Hb_008175_030 Hb_008175_030 Hb_000778_020--Hb_008175_030 Hb_057079_020 Hb_057079_020 Hb_000778_020--Hb_057079_020 Hb_002928_180 Hb_002928_180 Hb_000778_020--Hb_002928_180 Hb_010253_020 Hb_010253_020 Hb_000778_020--Hb_010253_020 Hb_001408_150 Hb_001408_150 Hb_000778_020--Hb_001408_150 Hb_000189_120 Hb_000189_120 Hb_000778_020--Hb_000189_120 Hb_003025_150 Hb_003025_150 Hb_002324_040--Hb_003025_150 Hb_012727_010 Hb_012727_010 Hb_002324_040--Hb_012727_010 Hb_002324_050 Hb_002324_050 Hb_002324_040--Hb_002324_050 Hb_003579_040 Hb_003579_040 Hb_002324_040--Hb_003579_040 Hb_004032_250 Hb_004032_250 Hb_002324_040--Hb_004032_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.9887 31.1105 8.40314 25.8136 1.83995 2.48682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.398652 0.0216354 0.082842 21.1207 10.0953

CAGE analysis