Hb_001073_020

Information

Type -
Description -
Location Contig1073: 3461-6940
Sequence    

Annotation

kegg
ID tcc:TCM_005525
description Ribosomal protein S13A
nr
ID KDO85807.1
description hypothetical protein CISIN_1g031854mg [Citrus sinensis]
swissprot
ID P62302
description 40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1
trembl
ID A0A067HD38
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031854mg PE=4 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02295: 7890-11605
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001073_020 0.0 - - hypothetical protein CISIN_1g031854mg [Citrus sinensis]
2 Hb_021901_010 0.0875213795 - - -
3 Hb_001168_080 0.0901586917 - - kinase, putative [Ricinus communis]
4 Hb_032582_010 0.0914015013 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
5 Hb_000905_030 0.0997908373 - - PREDICTED: cytochrome P450 87A3-like [Jatropha curcas]
6 Hb_010839_020 0.1013056759 - - -
7 Hb_002138_030 0.1014443052 - - -
8 Hb_151236_010 0.1017612 - - hypothetical protein POPTR_0010s11560g [Populus trichocarpa]
9 Hb_004195_050 0.102993709 - - -
10 Hb_007382_060 0.1030011277 - - -
11 Hb_003010_060 0.1032726697 - - Patatin T5 precursor, putative [Ricinus communis]
12 Hb_000000_220 0.1037260269 - - protein with unknown function [Ricinus communis]
13 Hb_007658_020 0.1037982932 - - Beta-amyrin synthase [Glycine soja]
14 Hb_001427_130 0.1053187834 - - PREDICTED: uncharacterized protein LOC101510272 [Cicer arietinum]
15 Hb_032215_070 0.1061292682 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_002677_010 0.1072161913 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2 [Populus euphratica]
17 Hb_083377_010 0.1116493791 - - unnamed protein product [Vitis vinifera]
18 Hb_008052_020 0.1118408365 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Brassica rapa]
19 Hb_001719_030 0.1119259575 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
20 Hb_008214_010 0.1120602199 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]

Gene co-expression network

sample Hb_001073_020 Hb_001073_020 Hb_021901_010 Hb_021901_010 Hb_001073_020--Hb_021901_010 Hb_001168_080 Hb_001168_080 Hb_001073_020--Hb_001168_080 Hb_032582_010 Hb_032582_010 Hb_001073_020--Hb_032582_010 Hb_000905_030 Hb_000905_030 Hb_001073_020--Hb_000905_030 Hb_010839_020 Hb_010839_020 Hb_001073_020--Hb_010839_020 Hb_002138_030 Hb_002138_030 Hb_001073_020--Hb_002138_030 Hb_021901_010--Hb_032582_010 Hb_013654_010 Hb_013654_010 Hb_021901_010--Hb_013654_010 Hb_002986_110 Hb_002986_110 Hb_021901_010--Hb_002986_110 Hb_002005_010 Hb_002005_010 Hb_021901_010--Hb_002005_010 Hb_008214_010 Hb_008214_010 Hb_021901_010--Hb_008214_010 Hb_001168_080--Hb_000905_030 Hb_151236_010 Hb_151236_010 Hb_001168_080--Hb_151236_010 Hb_001168_080--Hb_002138_030 Hb_001168_080--Hb_010839_020 Hb_004195_050 Hb_004195_050 Hb_001168_080--Hb_004195_050 Hb_007382_060 Hb_007382_060 Hb_001168_080--Hb_007382_060 Hb_002677_010 Hb_002677_010 Hb_032582_010--Hb_002677_010 Hb_008616_020 Hb_008616_020 Hb_032582_010--Hb_008616_020 Hb_032582_010--Hb_002986_110 Hb_032582_010--Hb_013654_010 Hb_032582_010--Hb_000905_030 Hb_000185_060 Hb_000185_060 Hb_032582_010--Hb_000185_060 Hb_008052_020 Hb_008052_020 Hb_000905_030--Hb_008052_020 Hb_000905_030--Hb_008214_010 Hb_000905_030--Hb_002005_010 Hb_032215_070 Hb_032215_070 Hb_000905_030--Hb_032215_070 Hb_001427_130 Hb_001427_130 Hb_000905_030--Hb_001427_130 Hb_003010_060 Hb_003010_060 Hb_000905_030--Hb_003010_060 Hb_010839_020--Hb_002138_030 Hb_010839_020--Hb_151236_010 Hb_010839_020--Hb_004195_050 Hb_010839_020--Hb_007382_060 Hb_000000_220 Hb_000000_220 Hb_010839_020--Hb_000000_220 Hb_007658_020 Hb_007658_020 Hb_010839_020--Hb_007658_020 Hb_002138_030--Hb_151236_010 Hb_002138_030--Hb_004195_050 Hb_002138_030--Hb_007382_060 Hb_002138_030--Hb_000000_220 Hb_002138_030--Hb_007658_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.103226 6.40844 0.071562 0 0 0.139461
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 8.73641 0

CAGE analysis