Hb_001073_070

Information

Type -
Description -
Location Contig1073: 78279-82042
Sequence    

Annotation

kegg
ID tcc:TCM_020888
description hypothetical protein
nr
ID XP_012085325.1
description PREDICTED: uncharacterized protein LOC105644546 isoform X1 [Jatropha curcas]
swissprot
ID Q6AZD3
description Chromatin modification-related protein MEAF6 OS=Danio rerio GN=meaf6 PE=2 SV=1
trembl
ID A0A067K404
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17697 PE=4 SV=1
Gene Ontology
ID GO:0005773
description chromatin modification-related protein meaf6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02302: 78405-81742
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001073_070 0.0 - - PREDICTED: uncharacterized protein LOC105644546 isoform X1 [Jatropha curcas]
2 Hb_005357_030 0.0802279545 - - PREDICTED: pyruvate, phosphate dikinase regulatory protein 1, chloroplastic [Jatropha curcas]
3 Hb_002399_010 0.0805189288 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002685_170 0.0820278339 - - hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
5 Hb_007590_050 0.0856335224 - - NudC domain-containing protein, putative [Ricinus communis]
6 Hb_002150_080 0.0902103292 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
7 Hb_011571_020 0.0915736372 - - PREDICTED: metal tolerance protein C4 [Jatropha curcas]
8 Hb_000554_020 0.0940991863 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
9 Hb_004324_370 0.0950419589 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g49142 [Jatropha curcas]
10 Hb_005332_070 0.0964730254 - - PREDICTED: uncharacterized protein LOC105632487 [Jatropha curcas]
11 Hb_004491_010 0.1003948739 - - 60S ribosomal protein L51, putative [Ricinus communis]
12 Hb_005694_110 0.1017965171 - - hypothetical protein PRUPE_ppa008137mg [Prunus persica]
13 Hb_001226_160 0.1020134923 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
14 Hb_001477_130 0.1020397542 - - PREDICTED: uncharacterized protein LOC105646871 [Jatropha curcas]
15 Hb_001252_110 0.1022725371 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
16 Hb_002375_020 0.1023619087 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
17 Hb_000923_020 0.1023658695 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
18 Hb_000621_080 0.1026416403 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001138_050 0.1030148176 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
20 Hb_004920_040 0.1030262205 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]

Gene co-expression network

sample Hb_001073_070 Hb_001073_070 Hb_005357_030 Hb_005357_030 Hb_001073_070--Hb_005357_030 Hb_002399_010 Hb_002399_010 Hb_001073_070--Hb_002399_010 Hb_002685_170 Hb_002685_170 Hb_001073_070--Hb_002685_170 Hb_007590_050 Hb_007590_050 Hb_001073_070--Hb_007590_050 Hb_002150_080 Hb_002150_080 Hb_001073_070--Hb_002150_080 Hb_011571_020 Hb_011571_020 Hb_001073_070--Hb_011571_020 Hb_004223_280 Hb_004223_280 Hb_005357_030--Hb_004223_280 Hb_005357_030--Hb_002685_170 Hb_005357_030--Hb_007590_050 Hb_001138_050 Hb_001138_050 Hb_005357_030--Hb_001138_050 Hb_019253_020 Hb_019253_020 Hb_005357_030--Hb_019253_020 Hb_001226_160 Hb_001226_160 Hb_005357_030--Hb_001226_160 Hb_001913_010 Hb_001913_010 Hb_002399_010--Hb_001913_010 Hb_000554_020 Hb_000554_020 Hb_002399_010--Hb_000554_020 Hb_002375_020 Hb_002375_020 Hb_002399_010--Hb_002375_020 Hb_003025_090 Hb_003025_090 Hb_002399_010--Hb_003025_090 Hb_004324_370 Hb_004324_370 Hb_002399_010--Hb_004324_370 Hb_004491_010 Hb_004491_010 Hb_002685_170--Hb_004491_010 Hb_002685_170--Hb_004223_280 Hb_002685_170--Hb_007590_050 Hb_028995_040 Hb_028995_040 Hb_002685_170--Hb_028995_040 Hb_003126_080 Hb_003126_080 Hb_002685_170--Hb_003126_080 Hb_000109_160 Hb_000109_160 Hb_007590_050--Hb_000109_160 Hb_000656_400 Hb_000656_400 Hb_007590_050--Hb_000656_400 Hb_020956_020 Hb_020956_020 Hb_007590_050--Hb_020956_020 Hb_007590_050--Hb_003126_080 Hb_000139_410 Hb_000139_410 Hb_002150_080--Hb_000139_410 Hb_000621_080 Hb_000621_080 Hb_002150_080--Hb_000621_080 Hb_002495_070 Hb_002495_070 Hb_002150_080--Hb_002495_070 Hb_010381_070 Hb_010381_070 Hb_002150_080--Hb_010381_070 Hb_002085_110 Hb_002085_110 Hb_002150_080--Hb_002085_110 Hb_002150_080--Hb_002685_170 Hb_011360_140 Hb_011360_140 Hb_011571_020--Hb_011360_140 Hb_003001_140 Hb_003001_140 Hb_011571_020--Hb_003001_140 Hb_005993_040 Hb_005993_040 Hb_011571_020--Hb_005993_040 Hb_001301_160 Hb_001301_160 Hb_011571_020--Hb_001301_160 Hb_005332_070 Hb_005332_070 Hb_011571_020--Hb_005332_070 Hb_000473_040 Hb_000473_040 Hb_011571_020--Hb_000473_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.24461 5.69406 2.07197 1.13204 5.13236 6.33078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.12481 9.43756 5.33282 2.75097 1.56823

CAGE analysis