Hb_001073_080

Information

Type -
Description -
Location Contig1073: 83606-88555
Sequence    

Annotation

kegg
ID rcu:RCOM_1214100
description hypothetical protein
nr
ID XP_012085324.1
description PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
swissprot
ID Q9SJX7
description Protein root UVB sensitive 2, chloroplastic OS=Arabidopsis thaliana GN=RUS2 PE=1 SV=2
trembl
ID A0A067JUM8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17696 PE=4 SV=1
Gene Ontology
ID GO:0005739
description protein root uvb sensitive chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02304: 83664-85343 , PASA_asmbl_02305: 86943-88570
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001073_080 0.0 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
2 Hb_007894_050 0.0907946075 - - PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
3 Hb_000390_090 0.1007081763 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
4 Hb_001301_340 0.1029833296 - - endoribonuclease L-PSP family protein [Populus trichocarpa]
5 Hb_001377_450 0.1036724712 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 2 isoform X1 [Jatropha curcas]
6 Hb_000160_180 0.1044326291 - - methionyl-tRNA formyltransferase, putative [Ricinus communis]
7 Hb_000429_040 0.1048987995 - - PREDICTED: chaperone protein dnaJ 6 [Vitis vinifera]
8 Hb_003126_130 0.1125537782 - - inositol-1-monophosphatase family protein [Populus trichocarpa]
9 Hb_002540_080 0.113456294 - - cysteine-type peptidase, putative [Ricinus communis]
10 Hb_000035_240 0.1152353858 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000740_040 0.1189164669 - - PREDICTED: uncharacterized protein LOC105126082 [Populus euphratica]
12 Hb_000413_240 0.1222434741 - - PREDICTED: transcription factor ILR3-like isoform X2 [Jatropha curcas]
13 Hb_000676_390 0.1231967553 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
14 Hb_000163_100 0.1243058046 - - PREDICTED: uncharacterized protein LOC105642537 [Jatropha curcas]
15 Hb_004041_020 0.1249491962 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
16 Hb_015299_030 0.1262003903 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
17 Hb_000832_190 0.128742918 - - Rab3 [Hevea brasiliensis]
18 Hb_131181_010 0.1304855941 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
19 Hb_004984_030 0.1344422158 - - protein with unknown function [Ricinus communis]
20 Hb_001804_090 0.1388131996 - - PREDICTED: uracil phosphoribosyltransferase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001073_080 Hb_001073_080 Hb_007894_050 Hb_007894_050 Hb_001073_080--Hb_007894_050 Hb_000390_090 Hb_000390_090 Hb_001073_080--Hb_000390_090 Hb_001301_340 Hb_001301_340 Hb_001073_080--Hb_001301_340 Hb_001377_450 Hb_001377_450 Hb_001073_080--Hb_001377_450 Hb_000160_180 Hb_000160_180 Hb_001073_080--Hb_000160_180 Hb_000429_040 Hb_000429_040 Hb_001073_080--Hb_000429_040 Hb_007894_050--Hb_001301_340 Hb_003126_130 Hb_003126_130 Hb_007894_050--Hb_003126_130 Hb_002872_050 Hb_002872_050 Hb_007894_050--Hb_002872_050 Hb_000392_550 Hb_000392_550 Hb_007894_050--Hb_000392_550 Hb_007894_050--Hb_001377_450 Hb_000413_240 Hb_000413_240 Hb_000390_090--Hb_000413_240 Hb_009252_060 Hb_009252_060 Hb_000390_090--Hb_009252_060 Hb_000413_060 Hb_000413_060 Hb_000390_090--Hb_000413_060 Hb_000163_100 Hb_000163_100 Hb_000390_090--Hb_000163_100 Hb_011053_010 Hb_011053_010 Hb_000390_090--Hb_011053_010 Hb_000035_240 Hb_000035_240 Hb_001301_340--Hb_000035_240 Hb_000317_260 Hb_000317_260 Hb_001301_340--Hb_000317_260 Hb_000394_180 Hb_000394_180 Hb_001301_340--Hb_000394_180 Hb_001369_790 Hb_001369_790 Hb_001301_340--Hb_001369_790 Hb_001301_340--Hb_000392_550 Hb_001377_450--Hb_000429_040 Hb_000832_190 Hb_000832_190 Hb_001377_450--Hb_000832_190 Hb_015299_030 Hb_015299_030 Hb_001377_450--Hb_015299_030 Hb_028396_010 Hb_028396_010 Hb_001377_450--Hb_028396_010 Hb_007894_170 Hb_007894_170 Hb_001377_450--Hb_007894_170 Hb_131181_010 Hb_131181_010 Hb_000160_180--Hb_131181_010 Hb_002540_080 Hb_002540_080 Hb_000160_180--Hb_002540_080 Hb_001318_260 Hb_001318_260 Hb_000160_180--Hb_001318_260 Hb_018133_020 Hb_018133_020 Hb_000160_180--Hb_018133_020 Hb_001279_080 Hb_001279_080 Hb_000160_180--Hb_001279_080 Hb_026053_020 Hb_026053_020 Hb_000160_180--Hb_026053_020 Hb_000429_040--Hb_000832_190 Hb_004041_020 Hb_004041_020 Hb_000429_040--Hb_004041_020 Hb_000429_040--Hb_000413_240 Hb_000429_040--Hb_000163_100 Hb_004984_030 Hb_004984_030 Hb_000429_040--Hb_004984_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.14402 0.586295 6.67531 3.04018 1.08358 1.35493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.04584 6.45774 2.5873 1.70792 2.68947

CAGE analysis