Hb_001076_020

Information

Type -
Description -
Location Contig1076: 99191-106373
Sequence    

Annotation

kegg
ID egr:104454482
description cytochrome b-c1 complex subunit 8
nr
ID XP_010067635.1
description PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
swissprot
ID P46269
description Cytochrome b-c1 complex subunit 8 OS=Solanum tuberosum PE=1 SV=2
trembl
ID A0A059BJE6
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03166 PE=4 SV=1
Gene Ontology
ID GO:0005750
description cytochrome b-c1 complex subunit 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02333: 99200-106301
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001076_020 0.0 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
2 Hb_000224_140 0.0624792856 - - ribonuclease z, chloroplast, putative [Ricinus communis]
3 Hb_005463_140 0.0766023892 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
4 Hb_017948_010 0.080987965 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
5 Hb_003326_020 0.0846228229 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
6 Hb_000193_120 0.0848415542 - - PREDICTED: protein preY, mitochondrial [Jatropha curcas]
7 Hb_000181_300 0.0907508759 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
8 Hb_005474_060 0.0914280137 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
9 Hb_068056_030 0.0920597989 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
10 Hb_002687_170 0.0921474013 - - PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Jatropha curcas]
11 Hb_004156_040 0.0922242645 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
12 Hb_003053_030 0.0924636781 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
13 Hb_000635_210 0.0930171863 - - unknown [Populus trichocarpa]
14 Hb_000817_030 0.0936587767 - - mak, putative [Ricinus communis]
15 Hb_000069_550 0.0941096157 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
16 Hb_003581_220 0.0948084049 - - unnamed protein product [Vitis vinifera]
17 Hb_000318_160 0.0958668805 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]
18 Hb_000567_410 0.0962901777 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
19 Hb_004459_040 0.0971354502 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
20 Hb_001633_030 0.0973219584 - - -

Gene co-expression network

sample Hb_001076_020 Hb_001076_020 Hb_000224_140 Hb_000224_140 Hb_001076_020--Hb_000224_140 Hb_005463_140 Hb_005463_140 Hb_001076_020--Hb_005463_140 Hb_017948_010 Hb_017948_010 Hb_001076_020--Hb_017948_010 Hb_003326_020 Hb_003326_020 Hb_001076_020--Hb_003326_020 Hb_000193_120 Hb_000193_120 Hb_001076_020--Hb_000193_120 Hb_000181_300 Hb_000181_300 Hb_001076_020--Hb_000181_300 Hb_068056_030 Hb_068056_030 Hb_000224_140--Hb_068056_030 Hb_001512_080 Hb_001512_080 Hb_000224_140--Hb_001512_080 Hb_003349_080 Hb_003349_080 Hb_000224_140--Hb_003349_080 Hb_000318_160 Hb_000318_160 Hb_000224_140--Hb_000318_160 Hb_000224_140--Hb_005463_140 Hb_072922_020 Hb_072922_020 Hb_005463_140--Hb_072922_020 Hb_001155_040 Hb_001155_040 Hb_005463_140--Hb_001155_040 Hb_005463_140--Hb_068056_030 Hb_005463_140--Hb_001512_080 Hb_000302_280 Hb_000302_280 Hb_005463_140--Hb_000302_280 Hb_000173_220 Hb_000173_220 Hb_017948_010--Hb_000173_220 Hb_003994_040 Hb_003994_040 Hb_017948_010--Hb_003994_040 Hb_153112_030 Hb_153112_030 Hb_017948_010--Hb_153112_030 Hb_001279_360 Hb_001279_360 Hb_017948_010--Hb_001279_360 Hb_001083_020 Hb_001083_020 Hb_017948_010--Hb_001083_020 Hb_003053_030 Hb_003053_030 Hb_017948_010--Hb_003053_030 Hb_003185_050 Hb_003185_050 Hb_003326_020--Hb_003185_050 Hb_001157_010 Hb_001157_010 Hb_003326_020--Hb_001157_010 Hb_000567_410 Hb_000567_410 Hb_003326_020--Hb_000567_410 Hb_003326_020--Hb_000193_120 Hb_000239_030 Hb_000239_030 Hb_003326_020--Hb_000239_030 Hb_000193_120--Hb_000181_300 Hb_000103_010 Hb_000103_010 Hb_000193_120--Hb_000103_010 Hb_000012_100 Hb_000012_100 Hb_000193_120--Hb_000012_100 Hb_004156_040 Hb_004156_040 Hb_000193_120--Hb_004156_040 Hb_001634_040 Hb_001634_040 Hb_000193_120--Hb_001634_040 Hb_001016_090 Hb_001016_090 Hb_000193_120--Hb_001016_090 Hb_000181_300--Hb_000012_100 Hb_000181_300--Hb_003053_030 Hb_001191_090 Hb_001191_090 Hb_000181_300--Hb_001191_090 Hb_002374_390 Hb_002374_390 Hb_000181_300--Hb_002374_390 Hb_000181_300--Hb_000103_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.9964 9.55816 20.9538 35.6601 28.4763 25.7438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
94.7089 165.752 92.4476 36.4048 43.1445

CAGE analysis