Hb_001079_020

Information

Type -
Description -
Location Contig1079: 21590-23897
Sequence    

Annotation

kegg
ID pop:POPTR_0012s13720g
description hypothetical protein
nr
ID XP_006377083.1
description hypothetical protein POPTR_0012s13720g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FUV8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s13720g PE=4 SV=1
Gene Ontology
ID GO:0005488
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001079_020 0.0 - - hypothetical protein POPTR_0012s13720g [Populus trichocarpa]
2 Hb_013766_010 0.222746034 - - hypothetical protein JCGZ_00483 [Jatropha curcas]
3 Hb_002805_020 0.2475363527 transcription factor TF Family: SRS transcription factor, putative [Ricinus communis]
4 Hb_002253_060 0.2731931287 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002486_010 0.2741139947 - - PREDICTED: sister chromatid cohesion 1 protein 1 [Jatropha curcas]
6 Hb_006420_090 0.2775731578 - - PREDICTED: zinc finger protein 5 [Jatropha curcas]
7 Hb_105328_030 0.2823823001 - - Putative retroelement [Oryza sativa Japonica Group]
8 Hb_000223_180 0.2863175309 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
9 Hb_000671_160 0.2913348326 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
10 Hb_008014_030 0.2936774626 - - Aquaporin NIP1.1, putative [Ricinus communis]
11 Hb_026687_010 0.2961556994 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Eucalyptus grandis]
12 Hb_004460_050 0.2970827838 - - chaperone protein DNAj, putative [Ricinus communis]
13 Hb_011077_020 0.2988654741 - - kinase, putative [Ricinus communis]
14 Hb_003777_360 0.2997469511 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
15 Hb_000297_020 0.3011717605 - - PREDICTED: protein phosphatase 2C 77 [Jatropha curcas]
16 Hb_000868_100 0.3022646463 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A [Jatropha curcas]
17 Hb_003750_030 0.3024775246 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
18 Hb_000300_130 0.302771901 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
19 Hb_000260_290 0.3030856152 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
20 Hb_003052_220 0.3036980816 - - -

Gene co-expression network

sample Hb_001079_020 Hb_001079_020 Hb_013766_010 Hb_013766_010 Hb_001079_020--Hb_013766_010 Hb_002805_020 Hb_002805_020 Hb_001079_020--Hb_002805_020 Hb_002253_060 Hb_002253_060 Hb_001079_020--Hb_002253_060 Hb_002486_010 Hb_002486_010 Hb_001079_020--Hb_002486_010 Hb_006420_090 Hb_006420_090 Hb_001079_020--Hb_006420_090 Hb_105328_030 Hb_105328_030 Hb_001079_020--Hb_105328_030 Hb_013766_010--Hb_002486_010 Hb_007747_180 Hb_007747_180 Hb_013766_010--Hb_007747_180 Hb_001565_110 Hb_001565_110 Hb_013766_010--Hb_001565_110 Hb_013766_010--Hb_002253_060 Hb_082182_010 Hb_082182_010 Hb_013766_010--Hb_082182_010 Hb_002805_020--Hb_002486_010 Hb_002660_060 Hb_002660_060 Hb_002805_020--Hb_002660_060 Hb_000671_160 Hb_000671_160 Hb_002805_020--Hb_000671_160 Hb_002805_020--Hb_007747_180 Hb_002805_020--Hb_013766_010 Hb_000297_020 Hb_000297_020 Hb_002805_020--Hb_000297_020 Hb_001720_060 Hb_001720_060 Hb_002253_060--Hb_001720_060 Hb_004291_010 Hb_004291_010 Hb_002253_060--Hb_004291_010 Hb_003106_120 Hb_003106_120 Hb_002253_060--Hb_003106_120 Hb_000836_490 Hb_000836_490 Hb_002253_060--Hb_000836_490 Hb_002486_010--Hb_007747_180 Hb_002486_010--Hb_082182_010 Hb_007747_140 Hb_007747_140 Hb_002486_010--Hb_007747_140 Hb_000011_420 Hb_000011_420 Hb_002486_010--Hb_000011_420 Hb_007101_290 Hb_007101_290 Hb_006420_090--Hb_007101_290 Hb_026527_020 Hb_026527_020 Hb_006420_090--Hb_026527_020 Hb_007317_080 Hb_007317_080 Hb_006420_090--Hb_007317_080 Hb_006420_090--Hb_105328_030 Hb_000300_130 Hb_000300_130 Hb_006420_090--Hb_000300_130 Hb_006420_090--Hb_000836_490 Hb_080147_100 Hb_080147_100 Hb_105328_030--Hb_080147_100 Hb_001504_120 Hb_001504_120 Hb_105328_030--Hb_001504_120 Hb_031527_060 Hb_031527_060 Hb_105328_030--Hb_031527_060 Hb_000317_360 Hb_000317_360 Hb_105328_030--Hb_000317_360 Hb_004460_050 Hb_004460_050 Hb_105328_030--Hb_004460_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.17788 3.51764 0 0.569793 0 0.0771928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.501762 6.74829 3.48846 5.66456 0

CAGE analysis