Hb_001079_030

Information

Type -
Description -
Location Contig1079: 39016-43185
Sequence    

Annotation

kegg
ID rcu:RCOM_1186310
description U2 snrnp auxiliary factor, small subunit, putative
nr
ID XP_012076220.1
description PREDICTED: splicing factor U2af small subunit B-like [Jatropha curcas]
swissprot
ID Q9ZQW8
description Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica GN=U2AF35A PE=2 SV=1
trembl
ID B9SN77
description U2 snrnp auxiliary factor, small subunit, putative OS=Ricinus communis GN=RCOM_1186310 PE=4 SV=1
Gene Ontology
ID GO:0005634
description splicing factor u2af small subunit b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02359: 39354-43114 , PASA_asmbl_02360: 42296-42682
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001079_030 0.0 - - PREDICTED: splicing factor U2af small subunit B-like [Jatropha curcas]
2 Hb_001409_050 0.1527201746 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_009193_110 0.153407367 - - PREDICTED: wall-associated receptor kinase-like 1 isoform X1 [Jatropha curcas]
4 Hb_001196_080 0.1559322048 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
5 Hb_000139_180 0.1592127807 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
6 Hb_012038_010 0.1645177746 - - phospholipid-transporting atpase, putative [Ricinus communis]
7 Hb_069841_010 0.164974479 - - resistance protein [Quercus suber]
8 Hb_004800_240 0.1662013852 - - PREDICTED: vam6/Vps39-like protein [Jatropha curcas]
9 Hb_009674_080 0.1709388049 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
10 Hb_000991_050 0.1714162831 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
11 Hb_004324_060 0.1814853309 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
12 Hb_000434_010 0.1829126526 - - PREDICTED: protein starmaker [Jatropha curcas]
13 Hb_002804_030 0.1852597782 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
14 Hb_001481_010 0.1857572908 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
15 Hb_000362_090 0.1904325762 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
16 Hb_005568_130 0.1926433557 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
17 Hb_000692_120 0.1940862739 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
18 Hb_002609_190 0.1944672124 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
19 Hb_004126_080 0.1944802011 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
20 Hb_003216_050 0.1957455238 - - PREDICTED: OBERON-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_001079_030 Hb_001079_030 Hb_001409_050 Hb_001409_050 Hb_001079_030--Hb_001409_050 Hb_009193_110 Hb_009193_110 Hb_001079_030--Hb_009193_110 Hb_001196_080 Hb_001196_080 Hb_001079_030--Hb_001196_080 Hb_000139_180 Hb_000139_180 Hb_001079_030--Hb_000139_180 Hb_012038_010 Hb_012038_010 Hb_001079_030--Hb_012038_010 Hb_069841_010 Hb_069841_010 Hb_001079_030--Hb_069841_010 Hb_005724_050 Hb_005724_050 Hb_001409_050--Hb_005724_050 Hb_001053_200 Hb_001053_200 Hb_001409_050--Hb_001053_200 Hb_003216_050 Hb_003216_050 Hb_001409_050--Hb_003216_050 Hb_000732_230 Hb_000732_230 Hb_001409_050--Hb_000732_230 Hb_001951_240 Hb_001951_240 Hb_001409_050--Hb_001951_240 Hb_000008_430 Hb_000008_430 Hb_001409_050--Hb_000008_430 Hb_004800_240 Hb_004800_240 Hb_009193_110--Hb_004800_240 Hb_000362_090 Hb_000362_090 Hb_009193_110--Hb_000362_090 Hb_009193_110--Hb_012038_010 Hb_000917_100 Hb_000917_100 Hb_009193_110--Hb_000917_100 Hb_002942_110 Hb_002942_110 Hb_009193_110--Hb_002942_110 Hb_008406_040 Hb_008406_040 Hb_009193_110--Hb_008406_040 Hb_000692_120 Hb_000692_120 Hb_001196_080--Hb_000692_120 Hb_000671_060 Hb_000671_060 Hb_001196_080--Hb_000671_060 Hb_001196_080--Hb_069841_010 Hb_003090_150 Hb_003090_150 Hb_001196_080--Hb_003090_150 Hb_005054_310 Hb_005054_310 Hb_001196_080--Hb_005054_310 Hb_002311_140 Hb_002311_140 Hb_001196_080--Hb_002311_140 Hb_000139_180--Hb_000671_060 Hb_020805_100 Hb_020805_100 Hb_000139_180--Hb_020805_100 Hb_000139_180--Hb_012038_010 Hb_000732_070 Hb_000732_070 Hb_000139_180--Hb_000732_070 Hb_001911_010 Hb_001911_010 Hb_000139_180--Hb_001911_010 Hb_000334_130 Hb_000334_130 Hb_000139_180--Hb_000334_130 Hb_044653_020 Hb_044653_020 Hb_012038_010--Hb_044653_020 Hb_009674_080 Hb_009674_080 Hb_012038_010--Hb_009674_080 Hb_004324_060 Hb_004324_060 Hb_012038_010--Hb_004324_060 Hb_003895_020 Hb_003895_020 Hb_012038_010--Hb_003895_020 Hb_012038_010--Hb_002942_110 Hb_000526_060 Hb_000526_060 Hb_012038_010--Hb_000526_060 Hb_069841_010--Hb_000732_070 Hb_000997_150 Hb_000997_150 Hb_069841_010--Hb_000997_150 Hb_000988_030 Hb_000988_030 Hb_069841_010--Hb_000988_030 Hb_069841_010--Hb_000671_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.17325 88.2313 40.7007 29.1501 51.2912 11.2347
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.7545 2.46254 1.52667 23.208 19.0084

CAGE analysis