Hb_001079_050

Information

Type -
Description -
Location Contig1079: 120147-120713
Sequence    

Annotation

kegg
ID rcu:RCOM_0411620
description Calmodulin, putative
nr
ID XP_002533274.1
description Calmodulin, putative [Ricinus communis]
swissprot
ID Q8L3R2
description Probable calcium-binding protein CML41 OS=Arabidopsis thaliana GN=CML41 PE=2 SV=2
trembl
ID B9T4V5
description Calmodulin, putative OS=Ricinus communis GN=RCOM_0411620 PE=4 SV=1
Gene Ontology
ID GO:0005509
description probable calcium-binding protein cml41

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 008_O11.ab1: 120070-120719

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001079_050 0.0 - - Calmodulin, putative [Ricinus communis]
2 Hb_006154_010 0.0661436777 - - UDP-glucose 6-dehydrogenase, putative [Ricinus communis]
3 Hb_169077_030 0.0850337353 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
4 Hb_003376_140 0.0885239558 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
5 Hb_004531_160 0.0892376971 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
6 Hb_000103_300 0.0921790831 - - PREDICTED: perakine reductase-like [Jatropha curcas]
7 Hb_010142_060 0.1028854677 - - Blue copper protein precursor, putative [Ricinus communis]
8 Hb_001663_060 0.1036113735 - - ribonuclease t2, putative [Ricinus communis]
9 Hb_000193_070 0.1045753262 - - hypothetical protein JCGZ_25373 [Jatropha curcas]
10 Hb_001534_140 0.1093925994 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
11 Hb_000152_570 0.1100698796 - - 21 kDa protein precursor, putative [Ricinus communis]
12 Hb_007659_050 0.1106071357 - - PREDICTED: xylogen-like protein 11 [Jatropha curcas]
13 Hb_000676_230 0.1126304345 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
14 Hb_000457_120 0.1157501256 - - PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
15 Hb_004032_290 0.1158024439 - - protein binding protein, putative [Ricinus communis]
16 Hb_000020_200 0.1158620441 - - hypothetical protein EUGRSUZ_B00411 [Eucalyptus grandis]
17 Hb_002284_060 0.1164713634 - - sugar transporter, putative [Ricinus communis]
18 Hb_005332_160 0.1174928347 - - PREDICTED: BAG family molecular chaperone regulator 2-like [Jatropha curcas]
19 Hb_178049_010 0.11847196 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
20 Hb_001410_080 0.119808924 - - ring finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001079_050 Hb_001079_050 Hb_006154_010 Hb_006154_010 Hb_001079_050--Hb_006154_010 Hb_169077_030 Hb_169077_030 Hb_001079_050--Hb_169077_030 Hb_003376_140 Hb_003376_140 Hb_001079_050--Hb_003376_140 Hb_004531_160 Hb_004531_160 Hb_001079_050--Hb_004531_160 Hb_000103_300 Hb_000103_300 Hb_001079_050--Hb_000103_300 Hb_010142_060 Hb_010142_060 Hb_001079_050--Hb_010142_060 Hb_006154_010--Hb_000103_300 Hb_000193_070 Hb_000193_070 Hb_006154_010--Hb_000193_070 Hb_006154_010--Hb_003376_140 Hb_006154_010--Hb_169077_030 Hb_000152_570 Hb_000152_570 Hb_006154_010--Hb_000152_570 Hb_007370_010 Hb_007370_010 Hb_169077_030--Hb_007370_010 Hb_012395_060 Hb_012395_060 Hb_169077_030--Hb_012395_060 Hb_169077_030--Hb_000152_570 Hb_169077_030--Hb_000193_070 Hb_005332_160 Hb_005332_160 Hb_169077_030--Hb_005332_160 Hb_003376_140--Hb_004531_160 Hb_006788_110 Hb_006788_110 Hb_003376_140--Hb_006788_110 Hb_003376_140--Hb_169077_030 Hb_003376_140--Hb_000193_070 Hb_003376_140--Hb_000103_300 Hb_004531_160--Hb_010142_060 Hb_003607_090 Hb_003607_090 Hb_004531_160--Hb_003607_090 Hb_002600_120 Hb_002600_120 Hb_004531_160--Hb_002600_120 Hb_005648_020 Hb_005648_020 Hb_004531_160--Hb_005648_020 Hb_000103_300--Hb_000152_570 Hb_000103_300--Hb_000193_070 Hb_002284_060 Hb_002284_060 Hb_000103_300--Hb_002284_060 Hb_002391_240 Hb_002391_240 Hb_000103_300--Hb_002391_240 Hb_000103_300--Hb_169077_030 Hb_001534_140 Hb_001534_140 Hb_010142_060--Hb_001534_140 Hb_000676_230 Hb_000676_230 Hb_010142_060--Hb_000676_230 Hb_000368_050 Hb_000368_050 Hb_010142_060--Hb_000368_050 Hb_004032_290 Hb_004032_290 Hb_010142_060--Hb_004032_290 Hb_000395_310 Hb_000395_310 Hb_010142_060--Hb_000395_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.03974 2.06726 9.02794 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.109972 0 0 1.06703 3.80997

CAGE analysis