Hb_001079_060

Information

Type -
Description -
Location Contig1079: 141293-144555
Sequence    

Annotation

kegg
ID rcu:RCOM_0411610
description hypothetical protein
nr
ID XP_012079099.1
description PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
swissprot
ID Q12010
description Probable vacuolar amino acid transporter YPQ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPQ1 PE=1 SV=1
trembl
ID A0A067KHT5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12276 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable vacuolar amino acid transporter ypq1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02363: 141289-144555 , PASA_asmbl_02364: 141286-144595 , PASA_asmbl_02365: 141329-144530
cDNA
(Sanger)
(ID:Location)		 002_M01.ab1: 141289-141630 , 028_I07.ab1: 141286-141630 , 049_B15.ab1: 141286-142724

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001079_060 0.0 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
2 Hb_001516_010 0.0616108669 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
3 Hb_002609_120 0.0797190252 - - hypothetical protein POPTR_0001s25660g [Populus trichocarpa]
4 Hb_001514_030 0.0803740992 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
5 Hb_004037_040 0.0854558552 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
6 Hb_009486_050 0.0876113263 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
7 Hb_002835_310 0.0902118472 - - ATP binding protein, putative [Ricinus communis]
8 Hb_000005_240 0.0910905198 - - Shugoshin-1, putative [Ricinus communis]
9 Hb_051663_010 0.0912047797 - - receptor-kinase, putative [Ricinus communis]
10 Hb_000000_390 0.0950394254 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
11 Hb_000009_270 0.0963086679 - - Calmodulin, putative [Ricinus communis]
12 Hb_000156_110 0.097596802 - - Uncharacterized protein TCM_029490 [Theobroma cacao]
13 Hb_032920_020 0.0977042585 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
14 Hb_002391_030 0.0982066427 - - hypothetical protein CISIN_1g020187mg [Citrus sinensis]
15 Hb_004122_010 0.1001816918 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
16 Hb_003938_230 0.1030061956 - - Potassium transporter, putative [Ricinus communis]
17 Hb_111985_100 0.1037066003 - - beta-galactosidase, putative [Ricinus communis]
18 Hb_001638_200 0.1050536937 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 43 [Jatropha curcas]
19 Hb_011671_050 0.1052718742 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
20 Hb_004076_060 0.1056219255 - - PREDICTED: UDP-glycosyltransferase 82A1 [Jatropha curcas]

Gene co-expression network

sample Hb_001079_060 Hb_001079_060 Hb_001516_010 Hb_001516_010 Hb_001079_060--Hb_001516_010 Hb_002609_120 Hb_002609_120 Hb_001079_060--Hb_002609_120 Hb_001514_030 Hb_001514_030 Hb_001079_060--Hb_001514_030 Hb_004037_040 Hb_004037_040 Hb_001079_060--Hb_004037_040 Hb_009486_050 Hb_009486_050 Hb_001079_060--Hb_009486_050 Hb_002835_310 Hb_002835_310 Hb_001079_060--Hb_002835_310 Hb_051663_010 Hb_051663_010 Hb_001516_010--Hb_051663_010 Hb_111985_100 Hb_111985_100 Hb_001516_010--Hb_111985_100 Hb_001516_010--Hb_002835_310 Hb_003938_230 Hb_003938_230 Hb_001516_010--Hb_003938_230 Hb_001516_010--Hb_001514_030 Hb_000009_270 Hb_000009_270 Hb_002609_120--Hb_000009_270 Hb_032920_020 Hb_032920_020 Hb_002609_120--Hb_032920_020 Hb_001638_200 Hb_001638_200 Hb_002609_120--Hb_001638_200 Hb_002609_120--Hb_009486_050 Hb_000156_110 Hb_000156_110 Hb_002609_120--Hb_000156_110 Hb_001021_120 Hb_001021_120 Hb_002609_120--Hb_001021_120 Hb_168918_010 Hb_168918_010 Hb_001514_030--Hb_168918_010 Hb_001514_030--Hb_004037_040 Hb_004122_010 Hb_004122_010 Hb_001514_030--Hb_004122_010 Hb_007218_040 Hb_007218_040 Hb_001514_030--Hb_007218_040 Hb_000189_180 Hb_000189_180 Hb_004037_040--Hb_000189_180 Hb_001958_010 Hb_001958_010 Hb_004037_040--Hb_001958_010 Hb_016333_010 Hb_016333_010 Hb_004037_040--Hb_016333_010 Hb_004037_040--Hb_168918_010 Hb_009486_050--Hb_000009_270 Hb_000005_240 Hb_000005_240 Hb_009486_050--Hb_000005_240 Hb_009486_050--Hb_001021_120 Hb_007922_030 Hb_007922_030 Hb_009486_050--Hb_007922_030 Hb_009486_050--Hb_001638_200 Hb_002835_310--Hb_000156_110 Hb_002391_030 Hb_002391_030 Hb_002835_310--Hb_002391_030 Hb_000424_130 Hb_000424_130 Hb_002835_310--Hb_000424_130 Hb_007545_070 Hb_007545_070 Hb_002835_310--Hb_007545_070 Hb_002835_310--Hb_003938_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.30756 10.0706 8.04789 0.0423544 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0687359 0 0 0.961646 6.36832

CAGE analysis