Hb_001079_070

Information

Type -
Description -
Location Contig1079: 183851-184665
Sequence    

Annotation

kegg
ID rcu:RCOM_0411580
description hypothetical protein
nr
ID XP_012079094.1
description PREDICTED: elongation of fatty acids protein 3-like [Jatropha curcas]
swissprot
ID Q9SYY4
description Elongation of fatty acids protein 3-like OS=Arabidopsis thaliana GN=HOS3 PE=2 SV=1
trembl
ID A0A067K6T6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12273 PE=4 SV=1
Gene Ontology
ID GO:0016021
description elongation of fatty acids protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 010_P11.ab1: 183802-184474

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001079_070 0.0 - - PREDICTED: elongation of fatty acids protein 3-like [Jatropha curcas]
2 Hb_000512_030 0.1568258492 - - wall-associated kinase, putative [Ricinus communis]
3 Hb_004254_110 0.1905874558 - - -
4 Hb_000105_020 0.191162264 - - PREDICTED: serine/threonine-protein kinase TOR-like [Malus domestica]
5 Hb_008948_160 0.1942963563 - - PREDICTED: uncharacterized protein LOC104214688 isoform X2 [Nicotiana sylvestris]
6 Hb_000105_030 0.1945184438 - - fkbp-rapamycin associated protein, putative [Ricinus communis]
7 Hb_000679_210 0.2003761705 - - grr1, plant, putative [Ricinus communis]
8 Hb_001608_020 0.203163976 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_003895_040 0.2032132178 - - hypothetical protein CISIN_1g0006512mg, partial [Citrus sinensis]
10 Hb_000809_180 0.204050622 - - -
11 Hb_000571_160 0.2078490154 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
12 Hb_004800_240 0.2085168829 - - PREDICTED: vam6/Vps39-like protein [Jatropha curcas]
13 Hb_120470_010 0.2087594587 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
14 Hb_003211_040 0.2091432536 - - PREDICTED: uncharacterized protein LOC105634664 isoform X1 [Jatropha curcas]
15 Hb_007576_210 0.2103415282 - - PREDICTED: protein furry homolog [Jatropha curcas]
16 Hb_000406_060 0.2111045988 - - hypothetical protein CICLE_v10000115mg [Citrus clementina]
17 Hb_014497_020 0.2126471981 - - PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Jatropha curcas]
18 Hb_113203_010 0.2131632546 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
19 Hb_012368_100 0.2135004548 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
20 Hb_000046_180 0.2146461409 - - PREDICTED: uncharacterized protein LOC105631840 [Jatropha curcas]

Gene co-expression network

sample Hb_001079_070 Hb_001079_070 Hb_000512_030 Hb_000512_030 Hb_001079_070--Hb_000512_030 Hb_004254_110 Hb_004254_110 Hb_001079_070--Hb_004254_110 Hb_000105_020 Hb_000105_020 Hb_001079_070--Hb_000105_020 Hb_008948_160 Hb_008948_160 Hb_001079_070--Hb_008948_160 Hb_000105_030 Hb_000105_030 Hb_001079_070--Hb_000105_030 Hb_000679_210 Hb_000679_210 Hb_001079_070--Hb_000679_210 Hb_003895_040 Hb_003895_040 Hb_000512_030--Hb_003895_040 Hb_002027_190 Hb_002027_190 Hb_000512_030--Hb_002027_190 Hb_000512_030--Hb_000679_210 Hb_000571_160 Hb_000571_160 Hb_000512_030--Hb_000571_160 Hb_014497_020 Hb_014497_020 Hb_000512_030--Hb_014497_020 Hb_000631_110 Hb_000631_110 Hb_000512_030--Hb_000631_110 Hb_004254_110--Hb_000105_020 Hb_143986_010 Hb_143986_010 Hb_004254_110--Hb_143986_010 Hb_004254_110--Hb_008948_160 Hb_005962_010 Hb_005962_010 Hb_004254_110--Hb_005962_010 Hb_146339_010 Hb_146339_010 Hb_004254_110--Hb_146339_010 Hb_000105_020--Hb_008948_160 Hb_000105_020--Hb_143986_010 Hb_000105_020--Hb_000105_030 Hb_000162_020 Hb_000162_020 Hb_000105_020--Hb_000162_020 Hb_003604_040 Hb_003604_040 Hb_000105_020--Hb_003604_040 Hb_000046_180 Hb_000046_180 Hb_000105_020--Hb_000046_180 Hb_120470_010 Hb_120470_010 Hb_008948_160--Hb_120470_010 Hb_008948_160--Hb_000105_030 Hb_008948_160--Hb_143986_010 Hb_011791_020 Hb_011791_020 Hb_008948_160--Hb_011791_020 Hb_008948_160--Hb_003604_040 Hb_000105_030--Hb_000631_110 Hb_000105_030--Hb_014497_020 Hb_011609_150 Hb_011609_150 Hb_000105_030--Hb_011609_150 Hb_003211_040 Hb_003211_040 Hb_000105_030--Hb_003211_040 Hb_000175_120 Hb_000175_120 Hb_000105_030--Hb_000175_120 Hb_000679_210--Hb_000571_160 Hb_011861_080 Hb_011861_080 Hb_000679_210--Hb_011861_080 Hb_002631_200 Hb_002631_200 Hb_000679_210--Hb_002631_200 Hb_134279_010 Hb_134279_010 Hb_000679_210--Hb_134279_010 Hb_000789_240 Hb_000789_240 Hb_000679_210--Hb_000789_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.96069 6.42971 1.43219 2.30781 5.01914 0.887017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.163576 2.13917 5.54109 3.62843

CAGE analysis