Hb_001080_080

Information

Type -
Description -
Location Contig1080: 30800-33631
Sequence    

Annotation

kegg
ID rcu:RCOM_1600990
description small nuclear ribonucleoprotein, putative
nr
ID XP_002510673.1
description small nuclear ribonucleoprotein, putative [Ricinus communis]
swissprot
ID Q9LM92
description Small nuclear ribonucleoprotein SmD3b OS=Arabidopsis thaliana GN=SMD3B PE=2 SV=1
trembl
ID B9R8N0
description Small nuclear ribonucleoprotein, putative OS=Ricinus communis GN=RCOM_1600990 PE=4 SV=1
Gene Ontology
ID GO:0019013
description small nuclear ribonucleoprotein sm d3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02407: 30734-33507
cDNA
(Sanger)
(ID:Location)		 027_P11.ab1: 30739-33493 , 043_P06.ab1: 30734-33493 , 047_J19.ab1: 30734-33495

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001080_080 0.0 - - small nuclear ribonucleoprotein, putative [Ricinus communis]
2 Hb_144598_020 0.0688958455 - - PREDICTED: triphosphate tunel metalloenzyme 3 [Jatropha curcas]
3 Hb_000221_150 0.0735236446 - - -
4 Hb_007416_020 0.0746533639 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]
5 Hb_000028_400 0.0787957213 - - Protein SSU72, putative [Ricinus communis]
6 Hb_001045_080 0.0812994307 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
7 Hb_029584_060 0.0823278376 - - Grave disease carrier protein, putative [Ricinus communis]
8 Hb_002431_050 0.0824249895 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
9 Hb_000340_140 0.0840564374 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Vitis vinifera]
10 Hb_011781_030 0.0841221576 - - Frataxin, mitochondrial precursor, putative [Ricinus communis]
11 Hb_004317_040 0.0862573031 - - hypothetical protein POPTR_0006s22010g [Populus trichocarpa]
12 Hb_000545_150 0.0868922374 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
13 Hb_001383_060 0.0888815143 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
14 Hb_001268_140 0.0890334139 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002830_020 0.0897165953 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_000120_750 0.0904261034 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
17 Hb_000283_110 0.090685113 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
18 Hb_003125_150 0.0924977153 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
19 Hb_000317_340 0.0929572749 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001638_260 0.0949049086 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]

Gene co-expression network

sample Hb_001080_080 Hb_001080_080 Hb_144598_020 Hb_144598_020 Hb_001080_080--Hb_144598_020 Hb_000221_150 Hb_000221_150 Hb_001080_080--Hb_000221_150 Hb_007416_020 Hb_007416_020 Hb_001080_080--Hb_007416_020 Hb_000028_400 Hb_000028_400 Hb_001080_080--Hb_000028_400 Hb_001045_080 Hb_001045_080 Hb_001080_080--Hb_001045_080 Hb_029584_060 Hb_029584_060 Hb_001080_080--Hb_029584_060 Hb_144598_020--Hb_007416_020 Hb_002431_050 Hb_002431_050 Hb_144598_020--Hb_002431_050 Hb_002234_070 Hb_002234_070 Hb_144598_020--Hb_002234_070 Hb_010672_060 Hb_010672_060 Hb_144598_020--Hb_010672_060 Hb_000029_200 Hb_000029_200 Hb_144598_020--Hb_000029_200 Hb_000340_140 Hb_000340_140 Hb_000221_150--Hb_000340_140 Hb_000221_150--Hb_000028_400 Hb_000364_030 Hb_000364_030 Hb_000221_150--Hb_000364_030 Hb_000221_150--Hb_007416_020 Hb_000333_090 Hb_000333_090 Hb_000221_150--Hb_000333_090 Hb_007416_020--Hb_002431_050 Hb_007416_020--Hb_010672_060 Hb_000365_080 Hb_000365_080 Hb_007416_020--Hb_000365_080 Hb_003226_210 Hb_003226_210 Hb_007416_020--Hb_003226_210 Hb_007416_020--Hb_029584_060 Hb_005590_020 Hb_005590_020 Hb_000028_400--Hb_005590_020 Hb_007575_070 Hb_007575_070 Hb_000028_400--Hb_007575_070 Hb_000567_170 Hb_000567_170 Hb_000028_400--Hb_000567_170 Hb_001248_080 Hb_001248_080 Hb_000028_400--Hb_001248_080 Hb_003125_150 Hb_003125_150 Hb_001045_080--Hb_003125_150 Hb_009851_100 Hb_009851_100 Hb_001045_080--Hb_009851_100 Hb_001268_140 Hb_001268_140 Hb_001045_080--Hb_001268_140 Hb_000312_090 Hb_000312_090 Hb_001045_080--Hb_000312_090 Hb_001269_270 Hb_001269_270 Hb_001045_080--Hb_001269_270 Hb_000046_260 Hb_000046_260 Hb_001045_080--Hb_000046_260 Hb_029584_060--Hb_002431_050 Hb_002830_020 Hb_002830_020 Hb_029584_060--Hb_002830_020 Hb_000120_750 Hb_000120_750 Hb_029584_060--Hb_000120_750 Hb_000201_120 Hb_000201_120 Hb_029584_060--Hb_000201_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.9911 25.4965 34.1157 36.3187 37.5903 85.1326
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
146.649 184.001 79.8619 20.4188 23.5345

CAGE analysis