Hb_001080_090

Information

Type -
Description -
Location Contig1080: 34145-40871
Sequence    

Annotation

kegg
ID rcu:RCOM_1601000
description protein binding protein, putative
nr
ID XP_012073654.1
description PREDICTED: BTB/POZ domain-containing protein At2g30600 isoform X1 [Jatropha curcas]
swissprot
ID Q8LEV3
description BTB/POZ domain-containing protein At2g30600 OS=Arabidopsis thaliana GN=At2g30600/At2g30610 PE=2 SV=1
trembl
ID B9R8N1
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1601000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02409: 34295-35197 , PASA_asmbl_02411: 35601-37775
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001080_090 0.0 - - PREDICTED: BTB/POZ domain-containing protein At2g30600 isoform X1 [Jatropha curcas]
2 Hb_004899_260 0.0766318098 - - PREDICTED: uncharacterized protein LOC105638006 [Jatropha curcas]
3 Hb_000282_080 0.0997342522 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001790_080 0.1004696437 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X3 [Jatropha curcas]
5 Hb_000130_260 0.1006056329 rubber biosynthesis Gene Name: Dimethyallyltransferase PREDICTED: tRNA dimethylallyltransferase 9 isoform X1 [Jatropha curcas]
6 Hb_001589_010 0.1013937113 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
7 Hb_002758_010 0.1027624214 - - PREDICTED: ribonuclease II, chloroplastic/mitochondrial [Populus euphratica]
8 Hb_000665_130 0.1058428574 - - PREDICTED: uncharacterized protein LOC105637599 isoform X2 [Jatropha curcas]
9 Hb_000130_320 0.1093144765 desease resistance Gene Name: AAA PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
10 Hb_007763_070 0.1135793548 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Jatropha curcas]
11 Hb_006816_370 0.1160462128 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]
12 Hb_000648_040 0.1160900309 - - unknown [Populus trichocarpa]
13 Hb_001936_090 0.1175685781 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X1 [Jatropha curcas]
14 Hb_158560_010 0.1193160029 - - PREDICTED: LOW QUALITY PROTEIN: probable acyl-activating enzyme 1, peroxisomal [Jatropha curcas]
15 Hb_000007_010 0.1203694403 - - PREDICTED: protein PHYLLO, chloroplastic [Jatropha curcas]
16 Hb_006775_130 0.1219780417 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
17 Hb_003417_040 0.1239725391 transcription factor TF Family: mTERF hypothetical protein JCGZ_10155 [Jatropha curcas]
18 Hb_005116_050 0.1249763449 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_000215_070 0.1254517585 - - PREDICTED: uncharacterized protein LOC105119782 isoform X1 [Populus euphratica]
20 Hb_029584_070 0.1266758518 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Jatropha curcas]

Gene co-expression network

sample Hb_001080_090 Hb_001080_090 Hb_004899_260 Hb_004899_260 Hb_001080_090--Hb_004899_260 Hb_000282_080 Hb_000282_080 Hb_001080_090--Hb_000282_080 Hb_001790_080 Hb_001790_080 Hb_001080_090--Hb_001790_080 Hb_000130_260 Hb_000130_260 Hb_001080_090--Hb_000130_260 Hb_001589_010 Hb_001589_010 Hb_001080_090--Hb_001589_010 Hb_002758_010 Hb_002758_010 Hb_001080_090--Hb_002758_010 Hb_007763_070 Hb_007763_070 Hb_004899_260--Hb_007763_070 Hb_006816_370 Hb_006816_370 Hb_004899_260--Hb_006816_370 Hb_004899_260--Hb_001790_080 Hb_000538_280 Hb_000538_280 Hb_004899_260--Hb_000538_280 Hb_000665_130 Hb_000665_130 Hb_004899_260--Hb_000665_130 Hb_005511_140 Hb_005511_140 Hb_000282_080--Hb_005511_140 Hb_001195_450 Hb_001195_450 Hb_000282_080--Hb_001195_450 Hb_001314_080 Hb_001314_080 Hb_000282_080--Hb_001314_080 Hb_000282_080--Hb_002758_010 Hb_000023_260 Hb_000023_260 Hb_000282_080--Hb_000023_260 Hb_000130_320 Hb_000130_320 Hb_001790_080--Hb_000130_320 Hb_000349_240 Hb_000349_240 Hb_001790_080--Hb_000349_240 Hb_029584_070 Hb_029584_070 Hb_001790_080--Hb_029584_070 Hb_001163_060 Hb_001163_060 Hb_001790_080--Hb_001163_060 Hb_003475_020 Hb_003475_020 Hb_001790_080--Hb_003475_020 Hb_001936_090 Hb_001936_090 Hb_001790_080--Hb_001936_090 Hb_000130_260--Hb_029584_070 Hb_000130_260--Hb_001790_080 Hb_000130_260--Hb_002758_010 Hb_000130_260--Hb_001936_090 Hb_000130_260--Hb_004899_260 Hb_002205_230 Hb_002205_230 Hb_001589_010--Hb_002205_230 Hb_000720_050 Hb_000720_050 Hb_001589_010--Hb_000720_050 Hb_001589_010--Hb_001936_090 Hb_005116_050 Hb_005116_050 Hb_001589_010--Hb_005116_050 Hb_001789_110 Hb_001789_110 Hb_001589_010--Hb_001789_110 Hb_004450_040 Hb_004450_040 Hb_001589_010--Hb_004450_040 Hb_002758_010--Hb_000130_320 Hb_002758_010--Hb_002205_230 Hb_005731_160 Hb_005731_160 Hb_002758_010--Hb_005731_160 Hb_002758_010--Hb_001936_090 Hb_005253_030 Hb_005253_030 Hb_002758_010--Hb_005253_030 Hb_002758_010--Hb_001589_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.8118 7.88099 3.69895 5.1538 4.63626 4.60931
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.36379 6.95785 3.72965 3.74843 17.4516

CAGE analysis