Hb_001080_230

Information

Type transcription factor
Description TF Family: PHD
Location Contig1080: 212786-223568
Sequence    

Annotation

kegg
ID pop:POPTR_0005s23270g
description POPTRDRAFT_205490; hypothetical protein
nr
ID XP_012092219.1
description PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]
swissprot
ID F4IXE7
description Increased DNA methylation 1 OS=Arabidopsis thaliana GN=IDM1 PE=1 SV=1
trembl
ID A0A067JPH5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21915 PE=4 SV=1
Gene Ontology
ID GO:0003824
description e3 ubiquitin-protein ligase trim33

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02431: 215258-221976 , PASA_asmbl_02435: 223078-223535
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001080_230 0.0 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]
2 Hb_000003_190 0.0404081052 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like isoform X1 [Nelumbo nucifera]
3 Hb_000092_020 0.0518144971 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
4 Hb_000395_130 0.0524446809 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]
5 Hb_003470_080 0.0619894917 transcription factor TF Family: SNF2 PREDICTED: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 [Jatropha curcas]
6 Hb_002872_040 0.0637049164 - - pumilio, putative [Ricinus communis]
7 Hb_003030_060 0.063880568 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
8 Hb_011537_050 0.0652883738 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
9 Hb_000170_150 0.0684592358 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
10 Hb_002864_010 0.0697742372 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
11 Hb_001329_160 0.0698697169 - - PREDICTED: uncharacterized protein LOC105642679 isoform X1 [Jatropha curcas]
12 Hb_001104_190 0.0706179304 - - PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
13 Hb_005496_110 0.0718931039 - - PREDICTED: uncharacterized protein LOC105107584 [Populus euphratica]
14 Hb_001614_060 0.073201581 - - hypothetical protein JCGZ_06918 [Jatropha curcas]
15 Hb_000035_290 0.0732751072 - - RNA recognition motif-containing family protein [Populus trichocarpa]
16 Hb_000329_370 0.0734367354 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
17 Hb_011491_010 0.0736952516 - - Protein YME1, putative [Ricinus communis]
18 Hb_000574_540 0.0737711357 - - ATP binding protein, putative [Ricinus communis]
19 Hb_008959_020 0.0742250733 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
20 Hb_001638_270 0.0744530989 - - PREDICTED: vacuolar protein sorting-associated protein 8 homolog isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001080_230 Hb_001080_230 Hb_000003_190 Hb_000003_190 Hb_001080_230--Hb_000003_190 Hb_000092_020 Hb_000092_020 Hb_001080_230--Hb_000092_020 Hb_000395_130 Hb_000395_130 Hb_001080_230--Hb_000395_130 Hb_003470_080 Hb_003470_080 Hb_001080_230--Hb_003470_080 Hb_002872_040 Hb_002872_040 Hb_001080_230--Hb_002872_040 Hb_003030_060 Hb_003030_060 Hb_001080_230--Hb_003030_060 Hb_000003_190--Hb_000092_020 Hb_000003_190--Hb_003470_080 Hb_000003_190--Hb_002872_040 Hb_000003_190--Hb_000395_130 Hb_008959_020 Hb_008959_020 Hb_000003_190--Hb_008959_020 Hb_000092_020--Hb_000395_130 Hb_003785_040 Hb_003785_040 Hb_000092_020--Hb_003785_040 Hb_000574_540 Hb_000574_540 Hb_000092_020--Hb_000574_540 Hb_011491_010 Hb_011491_010 Hb_000092_020--Hb_011491_010 Hb_000441_120 Hb_000441_120 Hb_000395_130--Hb_000441_120 Hb_006420_040 Hb_006420_040 Hb_000395_130--Hb_006420_040 Hb_012779_090 Hb_012779_090 Hb_000395_130--Hb_012779_090 Hb_003206_130 Hb_003206_130 Hb_003470_080--Hb_003206_130 Hb_002253_080 Hb_002253_080 Hb_003470_080--Hb_002253_080 Hb_000069_470 Hb_000069_470 Hb_003470_080--Hb_000069_470 Hb_000170_150 Hb_000170_150 Hb_003470_080--Hb_000170_150 Hb_000243_250 Hb_000243_250 Hb_002872_040--Hb_000243_250 Hb_002872_040--Hb_000092_020 Hb_001638_270 Hb_001638_270 Hb_002872_040--Hb_001638_270 Hb_002872_040--Hb_000574_540 Hb_010712_050 Hb_010712_050 Hb_003030_060--Hb_010712_050 Hb_001225_040 Hb_001225_040 Hb_003030_060--Hb_001225_040 Hb_004837_180 Hb_004837_180 Hb_003030_060--Hb_004837_180 Hb_001546_080 Hb_001546_080 Hb_003030_060--Hb_001546_080 Hb_012194_030 Hb_012194_030 Hb_003030_060--Hb_012194_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5285 17.6492 6.8007 5.72456 9.92217 11.7944
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.59546 9.24039 7.75838 10.5396 9.97437

CAGE analysis