Hb_001080_290

Information

Type -
Description -
Location Contig1080: 255843-256472
Sequence    

Annotation

kegg
ID cit:102577962
description PSADA; PSI reaction center subunit II
nr
ID NP_001275788.1
description PSI reaction center subunit II [Citrus sinensis]
swissprot
ID P32869
description Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1
trembl
ID A8C1B5
description PSI reaction center subunit II OS=Citrus sinensis GN=psaDa PE=2 SV=1
Gene Ontology
ID GO:0009538
description photosystem i reaction center subunit chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02444: 255275-255430 , PASA_asmbl_02445: 255781-256620
cDNA
(Sanger)
(ID:Location)		 003_N12.ab1: 255831-256553 , 015_K10.ab1: 255831-256548 , 016_P20.ab1: 255825-256587 , 019_J01.ab1: 255831-256568 , 034_G06.ab1: 255829-256568 , 038_D14.ab1: 255781-256588 , 039_I04.ab1: 255781-256587 , 040_H14.ab1: 255829-256568 , 043_F04.ab1: 255830-256571 , 050_B03.ab1: 255829-256515

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001080_290 0.0 - - PSI reaction center subunit II [Citrus sinensis]
2 Hb_001951_050 0.0390930232 - - chlorophyll A/B binding protein, putative [Ricinus communis]
3 Hb_001140_110 0.0474797476 - - hypothetical protein JCGZ_26123 [Jatropha curcas]
4 Hb_077976_010 0.0578301428 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
5 Hb_001775_010 0.0626448155 - - conserved hypothetical protein [Ricinus communis]
6 Hb_042123_010 0.0658085236 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Populus euphratica]
7 Hb_001097_110 0.0675331702 - - gibberellin 20-oxidase, putative [Ricinus communis]
8 Hb_000608_160 0.0687867618 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
9 Hb_183479_030 0.0707834309 - - Photosystem I reaction center subunit V, chloroplast precursor, putative [Ricinus communis]
10 Hb_002600_110 0.0715998364 - - hypothetical protein POPTR_0004s10540g [Populus trichocarpa]
11 Hb_000504_220 0.0723268637 - - hypothetical protein JCGZ_10249 [Jatropha curcas]
12 Hb_000815_120 0.0725355749 - - calcium ion binding protein, putative [Ricinus communis]
13 Hb_000768_080 0.0748339469 - - Mlo protein [Hevea brasiliensis]
14 Hb_003058_150 0.0748505181 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
15 Hb_003622_050 0.0752804899 - - PREDICTED: respiratory burst oxidase homolog protein A-like [Jatropha curcas]
16 Hb_000940_120 0.0754353726 - - PREDICTED: proline-rich protein 4-like isoform X2 [Pyrus x bretschneideri]
17 Hb_004818_010 0.0757038874 - - hypothetical protein JCGZ_13628 [Jatropha curcas]
18 Hb_003805_110 0.0776812836 - - PREDICTED: laccase-11-like [Jatropha curcas]
19 Hb_003093_050 0.0806478121 - - PREDICTED: uncharacterized protein LOC105641023 isoform X2 [Jatropha curcas]
20 Hb_000530_060 0.0809535499 - - -

Gene co-expression network

sample Hb_001080_290 Hb_001080_290 Hb_001951_050 Hb_001951_050 Hb_001080_290--Hb_001951_050 Hb_001140_110 Hb_001140_110 Hb_001080_290--Hb_001140_110 Hb_077976_010 Hb_077976_010 Hb_001080_290--Hb_077976_010 Hb_001775_010 Hb_001775_010 Hb_001080_290--Hb_001775_010 Hb_042123_010 Hb_042123_010 Hb_001080_290--Hb_042123_010 Hb_001097_110 Hb_001097_110 Hb_001080_290--Hb_001097_110 Hb_001951_050--Hb_001140_110 Hb_001951_050--Hb_001097_110 Hb_004143_080 Hb_004143_080 Hb_001951_050--Hb_004143_080 Hb_000815_120 Hb_000815_120 Hb_001951_050--Hb_000815_120 Hb_001951_050--Hb_042123_010 Hb_003058_150 Hb_003058_150 Hb_001140_110--Hb_003058_150 Hb_001140_110--Hb_001097_110 Hb_003805_110 Hb_003805_110 Hb_001140_110--Hb_003805_110 Hb_000940_120 Hb_000940_120 Hb_001140_110--Hb_000940_120 Hb_077976_010--Hb_042123_010 Hb_077976_010--Hb_001097_110 Hb_077976_010--Hb_001140_110 Hb_077976_010--Hb_001951_050 Hb_077976_010--Hb_000815_120 Hb_000768_080 Hb_000768_080 Hb_001775_010--Hb_000768_080 Hb_008864_050 Hb_008864_050 Hb_001775_010--Hb_008864_050 Hb_010021_040 Hb_010021_040 Hb_001775_010--Hb_010021_040 Hb_002600_110 Hb_002600_110 Hb_001775_010--Hb_002600_110 Hb_001775_010--Hb_001951_050 Hb_042123_010--Hb_001097_110 Hb_042123_010--Hb_001140_110 Hb_042123_010--Hb_003058_150 Hb_000140_040 Hb_000140_040 Hb_001097_110--Hb_000140_040 Hb_001097_110--Hb_003805_110 Hb_007534_080 Hb_007534_080 Hb_001097_110--Hb_007534_080 Hb_001097_110--Hb_003058_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.359436 15.8162 238.186 401.672 0.160467 0.800051
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.87966 1.699 0.520371 5.1659 2402.03

CAGE analysis