Hb_001080_300

Information

Type -
Description -
Location Contig1080: 257886-264506
Sequence    

Annotation

kegg
ID rcu:RCOM_0557370
description hypothetical protein
nr
ID XP_012092227.1
description PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
swissprot
ID Q0WRC9
description F-box protein SKIP17 OS=Arabidopsis thaliana GN=SKIP17 PE=1 SV=1
trembl
ID A0A067JCB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21923 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02447: 260453-260697 , PASA_asmbl_02448: 263142-263432 , PASA_asmbl_02449: 262581-262872 , PASA_asmbl_02451: 260047-264166
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001080_300 0.0 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
2 Hb_004957_030 0.0660708689 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
3 Hb_000185_220 0.068108351 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
4 Hb_001627_040 0.0771777683 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 isoform X1 [Jatropha curcas]
5 Hb_000417_390 0.0775823452 - - PREDICTED: ER lumen protein-retaining receptor A [Jatropha curcas]
6 Hb_001029_040 0.0817511039 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
7 Hb_001975_150 0.0854067453 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
8 Hb_003517_070 0.0861819702 - - PREDICTED: protein transport protein Sec24-like At3g07100 [Jatropha curcas]
9 Hb_000504_180 0.0871630217 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
10 Hb_003206_110 0.0891326923 - - Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
11 Hb_011224_050 0.0891750075 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Populus euphratica]
12 Hb_000270_480 0.0905095634 - - Mannose-1-phosphate guanyltransferase alpha [Gossypium arboreum]
13 Hb_158530_020 0.0916897313 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
14 Hb_006059_010 0.0916948642 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
15 Hb_000309_050 0.092254084 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
16 Hb_074197_040 0.0924773986 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
17 Hb_055690_010 0.0924853989 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
18 Hb_007545_010 0.0928604833 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
19 Hb_000803_320 0.092940203 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
20 Hb_000365_010 0.0935745939 - - hypothetical protein POPTR_0006s10920g [Populus trichocarpa]

Gene co-expression network

sample Hb_001080_300 Hb_001080_300 Hb_004957_030 Hb_004957_030 Hb_001080_300--Hb_004957_030 Hb_000185_220 Hb_000185_220 Hb_001080_300--Hb_000185_220 Hb_001627_040 Hb_001627_040 Hb_001080_300--Hb_001627_040 Hb_000417_390 Hb_000417_390 Hb_001080_300--Hb_000417_390 Hb_001029_040 Hb_001029_040 Hb_001080_300--Hb_001029_040 Hb_001975_150 Hb_001975_150 Hb_001080_300--Hb_001975_150 Hb_015099_030 Hb_015099_030 Hb_004957_030--Hb_015099_030 Hb_001141_240 Hb_001141_240 Hb_004957_030--Hb_001141_240 Hb_007545_010 Hb_007545_010 Hb_004957_030--Hb_007545_010 Hb_006970_020 Hb_006970_020 Hb_004957_030--Hb_006970_020 Hb_004957_030--Hb_001627_040 Hb_006059_010 Hb_006059_010 Hb_000185_220--Hb_006059_010 Hb_001195_400 Hb_001195_400 Hb_000185_220--Hb_001195_400 Hb_003206_110 Hb_003206_110 Hb_000185_220--Hb_003206_110 Hb_000309_050 Hb_000309_050 Hb_000185_220--Hb_000309_050 Hb_000185_220--Hb_001975_150 Hb_001627_040--Hb_001029_040 Hb_001627_040--Hb_007545_010 Hb_000803_320 Hb_000803_320 Hb_001627_040--Hb_000803_320 Hb_001627_040--Hb_000417_390 Hb_000390_050 Hb_000390_050 Hb_000417_390--Hb_000390_050 Hb_000585_110 Hb_000585_110 Hb_000417_390--Hb_000585_110 Hb_000417_390--Hb_001029_040 Hb_015884_020 Hb_015884_020 Hb_000417_390--Hb_015884_020 Hb_074197_040 Hb_074197_040 Hb_000417_390--Hb_074197_040 Hb_001029_040--Hb_007545_010 Hb_003746_010 Hb_003746_010 Hb_001029_040--Hb_003746_010 Hb_001157_230 Hb_001157_230 Hb_001029_040--Hb_001157_230 Hb_138585_080 Hb_138585_080 Hb_001029_040--Hb_138585_080 Hb_022250_010 Hb_022250_010 Hb_001029_040--Hb_022250_010 Hb_011537_060 Hb_011537_060 Hb_001975_150--Hb_011537_060 Hb_000504_180 Hb_000504_180 Hb_001975_150--Hb_000504_180 Hb_004218_180 Hb_004218_180 Hb_001975_150--Hb_004218_180 Hb_000635_060 Hb_000635_060 Hb_001975_150--Hb_000635_060 Hb_003517_070 Hb_003517_070 Hb_001975_150--Hb_003517_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.25623 11.9153 13.8684 27.4536 5.25628 9.45012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2232 10.2789 12.2403 15.3581 29.6883

CAGE analysis