Hb_001081_050

Information

Type -
Description -
Location Contig1081: 59005-71170
Sequence    

Annotation

kegg
ID pop:POPTR_0001s07860g
description hypothetical protein
nr
ID XP_006368695.1
description hypothetical protein POPTR_0001s07860g [Populus trichocarpa]
swissprot
ID Q42798
description 3,9-dihydroxypterocarpan 6A-monooxygenase OS=Glycine max GN=CYP93A1 PE=1 SV=1
trembl
ID U5GSY5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s07860g PE=3 SV=1
Gene Ontology
ID GO:0004497
description flavonoid 3 -monooxygenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001081_050 0.0 - - hypothetical protein POPTR_0001s07860g [Populus trichocarpa]
2 Hb_184798_060 0.1155532092 - - conserved hypothetical protein [Ricinus communis]
3 Hb_027638_010 0.1253545651 - - Protein KES1, putative [Ricinus communis]
4 Hb_000208_220 0.1325237229 - - -
5 Hb_003144_010 0.1375943569 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
6 Hb_161881_010 0.142580824 - - laccase, putative [Ricinus communis]
7 Hb_004407_030 0.1445650973 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
8 Hb_003362_050 0.14691589 - - PREDICTED: probable sucrose-phosphate synthase 3 [Jatropha curcas]
9 Hb_028227_050 0.1498636028 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1 [Jatropha curcas]
10 Hb_002027_420 0.1526344858 - - hypothetical protein POPTR_0020s00240g [Populus trichocarpa]
11 Hb_007201_010 0.1529273595 - - PREDICTED: uncharacterized protein LOC105631226 isoform X2 [Jatropha curcas]
12 Hb_001671_130 0.1581589796 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
13 Hb_002553_030 0.1600075239 - - hypothetical protein POPTR_0008s16550g [Populus trichocarpa]
14 Hb_000922_110 0.1648599354 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
15 Hb_012528_040 0.1661023649 - - -
16 Hb_073467_010 0.166982542 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
17 Hb_011689_070 0.1671795563 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
18 Hb_004924_040 0.1677959323 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
19 Hb_000029_390 0.1677989116 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
20 Hb_003058_160 0.1680458503 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001081_050 Hb_001081_050 Hb_184798_060 Hb_184798_060 Hb_001081_050--Hb_184798_060 Hb_027638_010 Hb_027638_010 Hb_001081_050--Hb_027638_010 Hb_000208_220 Hb_000208_220 Hb_001081_050--Hb_000208_220 Hb_003144_010 Hb_003144_010 Hb_001081_050--Hb_003144_010 Hb_161881_010 Hb_161881_010 Hb_001081_050--Hb_161881_010 Hb_004407_030 Hb_004407_030 Hb_001081_050--Hb_004407_030 Hb_001761_160 Hb_001761_160 Hb_184798_060--Hb_001761_160 Hb_184798_060--Hb_000208_220 Hb_002553_030 Hb_002553_030 Hb_184798_060--Hb_002553_030 Hb_003414_020 Hb_003414_020 Hb_184798_060--Hb_003414_020 Hb_184798_060--Hb_003144_010 Hb_088080_040 Hb_088080_040 Hb_027638_010--Hb_088080_040 Hb_002551_030 Hb_002551_030 Hb_027638_010--Hb_002551_030 Hb_001338_170 Hb_001338_170 Hb_027638_010--Hb_001338_170 Hb_027638_010--Hb_161881_010 Hb_001508_010 Hb_001508_010 Hb_027638_010--Hb_001508_010 Hb_171685_070 Hb_171685_070 Hb_027638_010--Hb_171685_070 Hb_000208_220--Hb_002553_030 Hb_001300_090 Hb_001300_090 Hb_000208_220--Hb_001300_090 Hb_000208_220--Hb_161881_010 Hb_000208_220--Hb_001761_160 Hb_174230_010 Hb_174230_010 Hb_003144_010--Hb_174230_010 Hb_006495_030 Hb_006495_030 Hb_003144_010--Hb_006495_030 Hb_001136_050 Hb_001136_050 Hb_003144_010--Hb_001136_050 Hb_003053_100 Hb_003053_100 Hb_003144_010--Hb_003053_100 Hb_002010_010 Hb_002010_010 Hb_161881_010--Hb_002010_010 Hb_012528_040 Hb_012528_040 Hb_161881_010--Hb_012528_040 Hb_000123_070 Hb_000123_070 Hb_161881_010--Hb_000123_070 Hb_000922_110 Hb_000922_110 Hb_161881_010--Hb_000922_110 Hb_003732_030 Hb_003732_030 Hb_161881_010--Hb_003732_030 Hb_004030_010 Hb_004030_010 Hb_161881_010--Hb_004030_010 Hb_028227_050 Hb_028227_050 Hb_004407_030--Hb_028227_050 Hb_168319_040 Hb_168319_040 Hb_004407_030--Hb_168319_040 Hb_001671_130 Hb_001671_130 Hb_004407_030--Hb_001671_130 Hb_001832_180 Hb_001832_180 Hb_004407_030--Hb_001832_180 Hb_009093_020 Hb_009093_020 Hb_004407_030--Hb_009093_020 Hb_000282_100 Hb_000282_100 Hb_004407_030--Hb_000282_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0496224 1.11721 1.96825 0.162824 0.0348496 0.0434838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0564763 0 0 0 14.0856

CAGE analysis