Hb_001083_020

Information

Type -
Description -
Location Contig1083: 22877-31433
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID M0ZLF1
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400001312 PE=4 SV=1
Gene Ontology
ID GO:0005515
description taf5-like rna polymerase ii p300 cbp-associated factor-associated factor 65 kda subunit 5l

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001083_020 0.0 - - -
2 Hb_001775_110 0.0584318296 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Jatropha curcas]
3 Hb_000230_510 0.0668071909 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
4 Hb_017948_010 0.0683799914 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
5 Hb_012675_060 0.0694611447 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
6 Hb_001360_050 0.0717635624 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
7 Hb_009393_210 0.0773816065 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
8 Hb_011909_100 0.0776418131 - - conserved hypothetical protein [Ricinus communis]
9 Hb_012753_160 0.078156232 - - ara4-interacting protein, putative [Ricinus communis]
10 Hb_000680_140 0.0796448513 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
11 Hb_024714_010 0.0797627072 - - HSP20-like chaperones superfamily protein isoform 1 [Theobroma cacao]
12 Hb_000173_220 0.08245086 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
13 Hb_003994_040 0.0825248712 - - -
14 Hb_004724_340 0.082940441 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
15 Hb_010080_090 0.0830648196 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Jatropha curcas]
16 Hb_002471_080 0.0835245416 - - oxidoreductase, putative [Ricinus communis]
17 Hb_000398_040 0.0839203569 - - Auxin response factor, putative [Ricinus communis]
18 Hb_000046_290 0.0865254707 - - PREDICTED: tubby-like F-box protein 3 [Tarenaya hassleriana]
19 Hb_020000_010 0.0876051816 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
20 Hb_002027_210 0.0883689022 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001083_020 Hb_001083_020 Hb_001775_110 Hb_001775_110 Hb_001083_020--Hb_001775_110 Hb_000230_510 Hb_000230_510 Hb_001083_020--Hb_000230_510 Hb_017948_010 Hb_017948_010 Hb_001083_020--Hb_017948_010 Hb_012675_060 Hb_012675_060 Hb_001083_020--Hb_012675_060 Hb_001360_050 Hb_001360_050 Hb_001083_020--Hb_001360_050 Hb_009393_210 Hb_009393_210 Hb_001083_020--Hb_009393_210 Hb_000398_040 Hb_000398_040 Hb_001775_110--Hb_000398_040 Hb_000046_290 Hb_000046_290 Hb_001775_110--Hb_000046_290 Hb_001775_110--Hb_001360_050 Hb_011909_100 Hb_011909_100 Hb_001775_110--Hb_011909_100 Hb_114336_020 Hb_114336_020 Hb_001775_110--Hb_114336_020 Hb_005289_030 Hb_005289_030 Hb_000230_510--Hb_005289_030 Hb_006117_070 Hb_006117_070 Hb_000230_510--Hb_006117_070 Hb_000384_100 Hb_000384_100 Hb_000230_510--Hb_000384_100 Hb_000230_510--Hb_012675_060 Hb_012753_160 Hb_012753_160 Hb_000230_510--Hb_012753_160 Hb_000173_220 Hb_000173_220 Hb_017948_010--Hb_000173_220 Hb_003994_040 Hb_003994_040 Hb_017948_010--Hb_003994_040 Hb_153112_030 Hb_153112_030 Hb_017948_010--Hb_153112_030 Hb_001279_360 Hb_001279_360 Hb_017948_010--Hb_001279_360 Hb_003053_030 Hb_003053_030 Hb_017948_010--Hb_003053_030 Hb_012675_060--Hb_012753_160 Hb_010080_090 Hb_010080_090 Hb_012675_060--Hb_010080_090 Hb_000834_270 Hb_000834_270 Hb_012675_060--Hb_000834_270 Hb_004586_320 Hb_004586_320 Hb_012675_060--Hb_004586_320 Hb_000574_480 Hb_000574_480 Hb_012675_060--Hb_000574_480 Hb_012675_060--Hb_000173_220 Hb_004724_340 Hb_004724_340 Hb_001360_050--Hb_004724_340 Hb_001833_110 Hb_001833_110 Hb_001360_050--Hb_001833_110 Hb_002471_080 Hb_002471_080 Hb_001360_050--Hb_002471_080 Hb_005092_060 Hb_005092_060 Hb_001360_050--Hb_005092_060 Hb_002759_060 Hb_002759_060 Hb_001360_050--Hb_002759_060 Hb_001360_050--Hb_012675_060 Hb_009393_210--Hb_002471_080 Hb_009393_210--Hb_001360_050 Hb_009393_210--Hb_000046_290 Hb_009393_210--Hb_004724_340 Hb_009393_210--Hb_001775_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.1217 0.462366 0.462764 0.6424 1.03152 1.33937
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.3519 3.1401 2.36533 1.05683 1.31397

CAGE analysis