Hb_001083_040

Information

Type -
Description -
Location Contig1083: 57397-58511
Sequence    

Annotation

kegg
ID csv:101226503
description 30S ribosomal protein S12-B, chloroplastic-like
nr
ID KCW72264.1
description hypothetical protein EUGRSUZ_E00717 [Eucalyptus grandis]
swissprot
ID A0ZZ59
description 30S ribosomal protein S12, chloroplastic OS=Gossypium barbadense GN=rps12-A PE=3 SV=1
trembl
ID A0A059C1Y4
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E00717 PE=3 SV=1
Gene Ontology
ID GO:0015935
description ribosomal protein s12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001083_040 0.0 - - hypothetical protein EUGRSUZ_E00717 [Eucalyptus grandis]
2 Hb_000156_240 0.0840039197 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
3 Hb_103465_010 0.0933803979 - - RNA polymerase beta subunit [Hevea brasiliensis]
4 Hb_004542_030 0.0941027659 - - hypothetical protein AMTR_s00334p00014280 [Amborella trichopoda]
5 Hb_001135_190 0.1040517944 transcription factor TF Family: Orphans Pseudo response regulator isoform 11 [Theobroma cacao]
6 Hb_185274_020 0.1069490633 - - Ycf2 (chloroplast) [Andrographis paniculata]
7 Hb_001674_050 0.1157675691 - - cytochrome b6 (chloroplast) [Apios americana]
8 Hb_003362_050 0.1268886182 - - PREDICTED: probable sucrose-phosphate synthase 3 [Jatropha curcas]
9 Hb_003125_100 0.1305827965 - - NAD(P)-binding Rossmann-fold superfamily protein [Theobroma cacao]
10 Hb_002027_420 0.1310086442 - - hypothetical protein POPTR_0020s00240g [Populus trichocarpa]
11 Hb_001338_080 0.1374841592 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Tamarindus indica]
12 Hb_004811_010 0.1377181677 - - DNA-directed RNA polymerase subunit beta, partial [Medicago truncatula]
13 Hb_179142_010 0.141168258 - - NADH dehydrogenase ND 2 subunit [Nicotiana tomentosiformis]
14 Hb_000832_050 0.1418186178 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Marila laxiflora]
15 Hb_151890_020 0.1439334716 - - photosystem II cp47 protein, partial (chloroplast) [Pentaphragma sp. Duangjai 49]
16 Hb_001951_040 0.1454491766 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
17 Hb_001610_100 0.1459125781 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
18 Hb_051924_010 0.1485812324 - - BnaA01g34100D [Brassica napus]
19 Hb_185274_010 0.1495674484 - - hypothetical protein ARALYDRAFT_330174 [Arabidopsis lyrata subsp. lyrata]
20 Hb_000922_110 0.1497444679 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]

Gene co-expression network

sample Hb_001083_040 Hb_001083_040 Hb_000156_240 Hb_000156_240 Hb_001083_040--Hb_000156_240 Hb_103465_010 Hb_103465_010 Hb_001083_040--Hb_103465_010 Hb_004542_030 Hb_004542_030 Hb_001083_040--Hb_004542_030 Hb_001135_190 Hb_001135_190 Hb_001083_040--Hb_001135_190 Hb_185274_020 Hb_185274_020 Hb_001083_040--Hb_185274_020 Hb_001674_050 Hb_001674_050 Hb_001083_040--Hb_001674_050 Hb_000156_240--Hb_103465_010 Hb_000156_240--Hb_004542_030 Hb_002027_420 Hb_002027_420 Hb_000156_240--Hb_002027_420 Hb_031194_010 Hb_031194_010 Hb_000156_240--Hb_031194_010 Hb_004811_010 Hb_004811_010 Hb_000156_240--Hb_004811_010 Hb_003693_060 Hb_003693_060 Hb_103465_010--Hb_003693_060 Hb_103465_010--Hb_004811_010 Hb_103465_010--Hb_031194_010 Hb_103465_010--Hb_004542_030 Hb_004542_030--Hb_002027_420 Hb_004542_030--Hb_001135_190 Hb_004542_030--Hb_004811_010 Hb_000832_050 Hb_000832_050 Hb_004542_030--Hb_000832_050 Hb_001951_040 Hb_001951_040 Hb_001135_190--Hb_001951_040 Hb_001135_170 Hb_001135_170 Hb_001135_190--Hb_001135_170 Hb_000282_100 Hb_000282_100 Hb_001135_190--Hb_000282_100 Hb_000029_390 Hb_000029_390 Hb_001135_190--Hb_000029_390 Hb_000349_150 Hb_000349_150 Hb_001135_190--Hb_000349_150 Hb_004855_030 Hb_004855_030 Hb_001135_190--Hb_004855_030 Hb_003125_100 Hb_003125_100 Hb_185274_020--Hb_003125_100 Hb_185274_020--Hb_000156_240 Hb_003032_090 Hb_003032_090 Hb_185274_020--Hb_003032_090 Hb_000029_380 Hb_000029_380 Hb_185274_020--Hb_000029_380 Hb_185274_010 Hb_185274_010 Hb_185274_020--Hb_185274_010 Hb_141708_010 Hb_141708_010 Hb_001674_050--Hb_141708_010 Hb_001338_080 Hb_001338_080 Hb_001674_050--Hb_001338_080 Hb_063885_010 Hb_063885_010 Hb_001674_050--Hb_063885_010 Hb_182972_020 Hb_182972_020 Hb_001674_050--Hb_182972_020 Hb_151890_020 Hb_151890_020 Hb_001674_050--Hb_151890_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0379889 0.359406 2.62558 0.772016 0.145194 0.376647
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.489668 0.112751 20.4764

CAGE analysis