Hb_001085_040

Information

Type -
Description -
Location Contig1085: 20382-21671
Sequence    

Annotation

kegg
ID rcu:RCOM_1018600
description hypothetical protein
nr
ID XP_012071116.1
description PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID A0A067KT11
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01108 PE=4 SV=1
Gene Ontology
ID GO:0012505
description o-fucosyltransferase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02550: 21578-21683
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001085_040 0.0 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
2 Hb_000270_030 0.1233271471 transcription factor TF Family: HB hypothetical protein POPTR_0015s07640g [Populus trichocarpa]
3 Hb_010021_030 0.1244665955 - - PREDICTED: pre-mRNA-processing protein 40A isoform X4 [Jatropha curcas]
4 Hb_002414_060 0.12656756 - - hypothetical protein EUGRSUZ_E01310 [Eucalyptus grandis]
5 Hb_011249_070 0.1277289618 - - hypothetical protein POPTR_0018s12610g [Populus trichocarpa]
6 Hb_001019_050 0.1283290698 - - PREDICTED: importin-13 [Jatropha curcas]
7 Hb_143629_130 0.1286912235 - - unnamed protein product [Coffea canephora]
8 Hb_029243_030 0.1303149102 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
9 Hb_004781_010 0.1306303224 - - PREDICTED: potassium transporter 11-like [Populus euphratica]
10 Hb_006910_060 0.1319229586 - - PREDICTED: MACPF domain-containing protein At1g14780-like [Jatropha curcas]
11 Hb_004317_060 0.1328182781 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
12 Hb_017387_010 0.134051585 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
13 Hb_000208_280 0.1345653701 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
14 Hb_000962_030 0.1346315398 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
15 Hb_006520_040 0.1349374377 - - PREDICTED: uncharacterized protein LOC105641714 isoform X2 [Jatropha curcas]
16 Hb_119530_010 0.1351313354 - - -
17 Hb_004677_050 0.1393761028 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
18 Hb_000120_820 0.1401739924 - - dihydrodipicolinate synthase, putative [Ricinus communis]
19 Hb_003055_040 0.1415817477 - - PREDICTED: secretory carrier-associated membrane protein 3-like isoform X1 [Jatropha curcas]
20 Hb_002213_020 0.1420587103 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001085_040 Hb_001085_040 Hb_000270_030 Hb_000270_030 Hb_001085_040--Hb_000270_030 Hb_010021_030 Hb_010021_030 Hb_001085_040--Hb_010021_030 Hb_002414_060 Hb_002414_060 Hb_001085_040--Hb_002414_060 Hb_011249_070 Hb_011249_070 Hb_001085_040--Hb_011249_070 Hb_001019_050 Hb_001019_050 Hb_001085_040--Hb_001019_050 Hb_143629_130 Hb_143629_130 Hb_001085_040--Hb_143629_130 Hb_003943_010 Hb_003943_010 Hb_000270_030--Hb_003943_010 Hb_001946_340 Hb_001946_340 Hb_000270_030--Hb_001946_340 Hb_006520_040 Hb_006520_040 Hb_000270_030--Hb_006520_040 Hb_002864_010 Hb_002864_010 Hb_000270_030--Hb_002864_010 Hb_013399_070 Hb_013399_070 Hb_000270_030--Hb_013399_070 Hb_021374_010 Hb_021374_010 Hb_000270_030--Hb_021374_010 Hb_007186_020 Hb_007186_020 Hb_010021_030--Hb_007186_020 Hb_000062_020 Hb_000062_020 Hb_010021_030--Hb_000062_020 Hb_004228_100 Hb_004228_100 Hb_010021_030--Hb_004228_100 Hb_010021_030--Hb_000270_030 Hb_000261_240 Hb_000261_240 Hb_010021_030--Hb_000261_240 Hb_008484_060 Hb_008484_060 Hb_010021_030--Hb_008484_060 Hb_000429_150 Hb_000429_150 Hb_002414_060--Hb_000429_150 Hb_002414_060--Hb_143629_130 Hb_007558_100 Hb_007558_100 Hb_002414_060--Hb_007558_100 Hb_004317_060 Hb_004317_060 Hb_002414_060--Hb_004317_060 Hb_138475_010 Hb_138475_010 Hb_002414_060--Hb_138475_010 Hb_000140_280 Hb_000140_280 Hb_002414_060--Hb_000140_280 Hb_001712_060 Hb_001712_060 Hb_011249_070--Hb_001712_060 Hb_012114_100 Hb_012114_100 Hb_011249_070--Hb_012114_100 Hb_000300_270 Hb_000300_270 Hb_011249_070--Hb_000300_270 Hb_012055_040 Hb_012055_040 Hb_011249_070--Hb_012055_040 Hb_002883_030 Hb_002883_030 Hb_011249_070--Hb_002883_030 Hb_003498_080 Hb_003498_080 Hb_011249_070--Hb_003498_080 Hb_000088_270 Hb_000088_270 Hb_001019_050--Hb_000088_270 Hb_025336_020 Hb_025336_020 Hb_001019_050--Hb_025336_020 Hb_000347_450 Hb_000347_450 Hb_001019_050--Hb_000347_450 Hb_000159_120 Hb_000159_120 Hb_001019_050--Hb_000159_120 Hb_107298_010 Hb_107298_010 Hb_001019_050--Hb_107298_010 Hb_005489_140 Hb_005489_140 Hb_001019_050--Hb_005489_140 Hb_143629_130--Hb_007558_100 Hb_000035_330 Hb_000035_330 Hb_143629_130--Hb_000035_330 Hb_003055_040 Hb_003055_040 Hb_143629_130--Hb_003055_040 Hb_002686_310 Hb_002686_310 Hb_143629_130--Hb_002686_310 Hb_143629_130--Hb_004317_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.632525 1.61925 0.500174 1.80721 0.504069 1.49697
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.746143 1.44438 0.412509 1.51049 1.37458

CAGE analysis