Hb_001085_060

Information

Type -
Description -
Location Contig1085: 30205-32321
Sequence    

Annotation

kegg
ID tcc:TCM_020290
description Tetratricopeptide repeat-like superfamily protein isoform 1
nr
ID XP_012071119.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g04840 [Jatropha curcas]
swissprot
ID Q9MAT2
description Pentatricopeptide repeat-containing protein At1g04840 OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1
trembl
ID A0A067KWK1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01110 PE=4 SV=1
Gene Ontology
ID GO:0009507
description pentatricopeptide repeat-containing protein at1g04840

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001085_060 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g04840 [Jatropha curcas]
2 Hb_007441_220 0.0658502712 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
3 Hb_000041_100 0.0732574489 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
4 Hb_002942_100 0.0769127999 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
5 Hb_000107_420 0.07902561 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
6 Hb_000603_110 0.0800565551 - - copper transporter, putative [Ricinus communis]
7 Hb_002316_150 0.0824578906 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
8 Hb_004724_150 0.0837744309 - - expressed protein, putative [Ricinus communis]
9 Hb_002435_120 0.0837960432 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_000245_040 0.0846460065 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
11 Hb_001341_170 0.0849971576 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
12 Hb_004374_070 0.0863490916 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
13 Hb_000297_010 0.0869720148 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
14 Hb_000009_560 0.0891632112 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
15 Hb_000140_230 0.0902661101 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
16 Hb_015934_040 0.0913359655 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
17 Hb_006649_050 0.091951296 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
18 Hb_002311_040 0.0926364285 - - hypothetical protein JCGZ_18966 [Jatropha curcas]
19 Hb_000185_040 0.094508004 - - PREDICTED: uncharacterized protein LOC103343434 [Prunus mume]
20 Hb_009767_110 0.0946381382 - - -

Gene co-expression network

sample Hb_001085_060 Hb_001085_060 Hb_007441_220 Hb_007441_220 Hb_001085_060--Hb_007441_220 Hb_000041_100 Hb_000041_100 Hb_001085_060--Hb_000041_100 Hb_002942_100 Hb_002942_100 Hb_001085_060--Hb_002942_100 Hb_000107_420 Hb_000107_420 Hb_001085_060--Hb_000107_420 Hb_000603_110 Hb_000603_110 Hb_001085_060--Hb_000603_110 Hb_002316_150 Hb_002316_150 Hb_001085_060--Hb_002316_150 Hb_007441_220--Hb_000041_100 Hb_007441_220--Hb_002316_150 Hb_000270_670 Hb_000270_670 Hb_007441_220--Hb_000270_670 Hb_001999_090 Hb_001999_090 Hb_007441_220--Hb_001999_090 Hb_000245_040 Hb_000245_040 Hb_007441_220--Hb_000245_040 Hb_003371_090 Hb_003371_090 Hb_000041_100--Hb_003371_090 Hb_002450_020 Hb_002450_020 Hb_000041_100--Hb_002450_020 Hb_000297_010 Hb_000297_010 Hb_000041_100--Hb_000297_010 Hb_000230_500 Hb_000230_500 Hb_000041_100--Hb_000230_500 Hb_011386_010 Hb_011386_010 Hb_000041_100--Hb_011386_010 Hb_003253_040 Hb_003253_040 Hb_002942_100--Hb_003253_040 Hb_002311_040 Hb_002311_040 Hb_002942_100--Hb_002311_040 Hb_006915_030 Hb_006915_030 Hb_002942_100--Hb_006915_030 Hb_004143_130 Hb_004143_130 Hb_002942_100--Hb_004143_130 Hb_012022_090 Hb_012022_090 Hb_002942_100--Hb_012022_090 Hb_001341_170 Hb_001341_170 Hb_002942_100--Hb_001341_170 Hb_000206_240 Hb_000206_240 Hb_000107_420--Hb_000206_240 Hb_000107_420--Hb_007441_220 Hb_004374_070 Hb_004374_070 Hb_000107_420--Hb_004374_070 Hb_002276_130 Hb_002276_130 Hb_000107_420--Hb_002276_130 Hb_000204_210 Hb_000204_210 Hb_000107_420--Hb_000204_210 Hb_009382_010 Hb_009382_010 Hb_000603_110--Hb_009382_010 Hb_000603_110--Hb_002316_150 Hb_000603_110--Hb_007441_220 Hb_000603_110--Hb_000041_100 Hb_008554_130 Hb_008554_130 Hb_000603_110--Hb_008554_130 Hb_006718_020 Hb_006718_020 Hb_002316_150--Hb_006718_020 Hb_002316_150--Hb_000270_670 Hb_000866_120 Hb_000866_120 Hb_002316_150--Hb_000866_120 Hb_000172_110 Hb_000172_110 Hb_002316_150--Hb_000172_110 Hb_000140_230 Hb_000140_230 Hb_002316_150--Hb_000140_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.95642 1.58431 0.63618 0.990318 1.31313 1.76555
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.775272 1.60346 2.38072 1.34498 1.36351

CAGE analysis