Hb_001085_070

Information

Type -
Description -
Location Contig1085: 32832-39662
Sequence    

Annotation

kegg
ID vvi:100248761
description UBX domain-containing protein 4
nr
ID XP_002273725.1
description PREDICTED: UBX domain-containing protein 4 [Vitis vinifera]
swissprot
ID Q6IP50
description UBX domain-containing protein 1-A OS=Xenopus laevis GN=ubxn1-a PE=2 SV=1
trembl
ID D7SNI5
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0029g01370 PE=4 SV=1
Gene Ontology
ID GO:0005829
description ubiquitin-associated domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001085_070 0.0 - - PREDICTED: UBX domain-containing protein 4 [Vitis vinifera]
2 Hb_084994_010 0.0999594083 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
3 Hb_002740_090 0.107829696 - - PREDICTED: putative membrane-bound O-acyltransferase C24H6.01c [Jatropha curcas]
4 Hb_002808_020 0.1122800414 - - PREDICTED: uncharacterized protein LOC105630318 isoform X1 [Jatropha curcas]
5 Hb_001892_030 0.1125543004 - - PREDICTED: phytanoyl-CoA dioxygenase isoform X1 [Jatropha curcas]
6 Hb_103688_010 0.1126579714 - - PREDICTED: sucrose-phosphatase 2-like [Jatropha curcas]
7 Hb_002639_030 0.1131863914 - - PREDICTED: prolyl endopeptidase [Jatropha curcas]
8 Hb_000664_020 0.1141850052 - - tryptophanyl-tRNA synthetase, putative [Ricinus communis]
9 Hb_000976_110 0.114912381 - - PREDICTED: KRR1 small subunit processome component homolog [Jatropha curcas]
10 Hb_033642_040 0.1163683981 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
11 Hb_001931_030 0.118389042 - - PREDICTED: T-complex protein 1 subunit eta-like [Nelumbo nucifera]
12 Hb_001307_240 0.1228550212 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
13 Hb_003093_040 0.1265101983 - - PREDICTED: nucleolar complex protein 4 homolog isoform X1 [Jatropha curcas]
14 Hb_003636_080 0.1282152586 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
15 Hb_005883_110 0.1284142668 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
16 Hb_003633_090 0.1289631892 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
17 Hb_000011_270 0.1292057491 - - PREDICTED: pumilio homolog 23 [Jatropha curcas]
18 Hb_000109_260 0.1309504427 - - PREDICTED: WAT1-related protein At3g28050-like isoform X1 [Jatropha curcas]
19 Hb_000342_050 0.1317740868 - - hypothetical protein POPTR_0006s24710g [Populus trichocarpa]
20 Hb_008206_080 0.1320791987 - - PREDICTED: probable cyclic nucleotide-gated ion channel 17 [Jatropha curcas]

Gene co-expression network

sample Hb_001085_070 Hb_001085_070 Hb_084994_010 Hb_084994_010 Hb_001085_070--Hb_084994_010 Hb_002740_090 Hb_002740_090 Hb_001085_070--Hb_002740_090 Hb_002808_020 Hb_002808_020 Hb_001085_070--Hb_002808_020 Hb_001892_030 Hb_001892_030 Hb_001085_070--Hb_001892_030 Hb_103688_010 Hb_103688_010 Hb_001085_070--Hb_103688_010 Hb_002639_030 Hb_002639_030 Hb_001085_070--Hb_002639_030 Hb_015099_030 Hb_015099_030 Hb_084994_010--Hb_015099_030 Hb_084994_010--Hb_002639_030 Hb_000664_020 Hb_000664_020 Hb_084994_010--Hb_000664_020 Hb_003490_060 Hb_003490_060 Hb_084994_010--Hb_003490_060 Hb_002392_020 Hb_002392_020 Hb_084994_010--Hb_002392_020 Hb_007137_050 Hb_007137_050 Hb_002740_090--Hb_007137_050 Hb_086063_020 Hb_086063_020 Hb_002740_090--Hb_086063_020 Hb_188063_050 Hb_188063_050 Hb_002740_090--Hb_188063_050 Hb_000703_330 Hb_000703_330 Hb_002740_090--Hb_000703_330 Hb_001250_050 Hb_001250_050 Hb_002740_090--Hb_001250_050 Hb_001227_120 Hb_001227_120 Hb_002740_090--Hb_001227_120 Hb_002808_020--Hb_002639_030 Hb_002808_020--Hb_103688_010 Hb_004837_280 Hb_004837_280 Hb_002808_020--Hb_004837_280 Hb_000849_080 Hb_000849_080 Hb_002808_020--Hb_000849_080 Hb_002301_030 Hb_002301_030 Hb_002808_020--Hb_002301_030 Hb_002687_200 Hb_002687_200 Hb_002808_020--Hb_002687_200 Hb_001241_010 Hb_001241_010 Hb_001892_030--Hb_001241_010 Hb_113853_010 Hb_113853_010 Hb_001892_030--Hb_113853_010 Hb_004333_040 Hb_004333_040 Hb_001892_030--Hb_004333_040 Hb_002126_030 Hb_002126_030 Hb_001892_030--Hb_002126_030 Hb_001892_030--Hb_002740_090 Hb_057688_010 Hb_057688_010 Hb_001892_030--Hb_057688_010 Hb_103688_010--Hb_000849_080 Hb_135959_010 Hb_135959_010 Hb_103688_010--Hb_135959_010 Hb_002007_260 Hb_002007_260 Hb_103688_010--Hb_002007_260 Hb_001558_040 Hb_001558_040 Hb_103688_010--Hb_001558_040 Hb_000157_070 Hb_000157_070 Hb_103688_010--Hb_000157_070 Hb_002639_030--Hb_004837_280 Hb_002639_030--Hb_000703_330 Hb_002639_030--Hb_002687_200 Hb_001226_130 Hb_001226_130 Hb_002639_030--Hb_001226_130 Hb_002552_040 Hb_002552_040 Hb_002639_030--Hb_002552_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.10456 1.34622 2.90449 2.34141 1.09121 1.40072
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.26092 0.888734 0.156152 2.67616 2.26149

CAGE analysis