Hb_001085_090

Information

Type -
Description -
Location Contig1085: 51529-51951
Sequence    

Annotation

kegg
ID sot:102602698
description uncharacterized LOC102602698
nr
ID XP_012072396.1
description PREDICTED: uncharacterized protein LOC105634186 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L134
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04833 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02560: 51410-52102
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001085_090 0.0 - - PREDICTED: uncharacterized protein LOC105634186 [Jatropha curcas]
2 Hb_000487_250 0.1180708407 - - 60S ribosomal protein L27e, putative [Ricinus communis]
3 Hb_000144_110 0.118845886 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
4 Hb_003641_020 0.1191234586 - - hypothetical protein POPTR_0006s13960g [Populus trichocarpa]
5 Hb_009787_040 0.1212693514 desease resistance Gene Name: AAA_17 PREDICTED: uncharacterized protein LOC105135462 isoform X2 [Populus euphratica]
6 Hb_007101_150 0.1234692647 - - hypothetical protein CICLE_v10033984mg [Citrus clementina]
7 Hb_000025_600 0.1268559039 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Jatropha curcas]
8 Hb_000258_170 0.1275451288 - - PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
9 Hb_003927_140 0.1279465084 - - PREDICTED: nudix hydrolase 9 isoform X1 [Jatropha curcas]
10 Hb_000099_060 0.1287562861 - - hypothetical protein JCGZ_23948 [Jatropha curcas]
11 Hb_001818_020 0.1287997446 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
12 Hb_000025_530 0.1297320621 - - PREDICTED: reactive oxygen species modulator 1 [Jatropha curcas]
13 Hb_005511_160 0.1300901714 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
14 Hb_000970_010 0.1304597699 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
15 Hb_000510_110 0.1317649301 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
16 Hb_019253_030 0.1322244739 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-3-like [Citrus sinensis]
17 Hb_012753_230 0.132419899 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
18 Hb_000815_270 0.1346893893 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001545_040 0.1348431826 - - PREDICTED: ras-related protein Rab7-like [Malus domestica]
20 Hb_010261_060 0.1354886053 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_001085_090 Hb_001085_090 Hb_000487_250 Hb_000487_250 Hb_001085_090--Hb_000487_250 Hb_000144_110 Hb_000144_110 Hb_001085_090--Hb_000144_110 Hb_003641_020 Hb_003641_020 Hb_001085_090--Hb_003641_020 Hb_009787_040 Hb_009787_040 Hb_001085_090--Hb_009787_040 Hb_007101_150 Hb_007101_150 Hb_001085_090--Hb_007101_150 Hb_000025_600 Hb_000025_600 Hb_001085_090--Hb_000025_600 Hb_005618_140 Hb_005618_140 Hb_000487_250--Hb_005618_140 Hb_001818_020 Hb_001818_020 Hb_000487_250--Hb_001818_020 Hb_000012_220 Hb_000012_220 Hb_000487_250--Hb_000012_220 Hb_000970_010 Hb_000970_010 Hb_000487_250--Hb_000970_010 Hb_000025_530 Hb_000025_530 Hb_000487_250--Hb_000025_530 Hb_007617_020 Hb_007617_020 Hb_000487_250--Hb_007617_020 Hb_000815_270 Hb_000815_270 Hb_000144_110--Hb_000815_270 Hb_011609_180 Hb_011609_180 Hb_000144_110--Hb_011609_180 Hb_001045_080 Hb_001045_080 Hb_000144_110--Hb_001045_080 Hb_009851_100 Hb_009851_100 Hb_000144_110--Hb_009851_100 Hb_000144_110--Hb_000025_600 Hb_009252_130 Hb_009252_130 Hb_000144_110--Hb_009252_130 Hb_012368_020 Hb_012368_020 Hb_003641_020--Hb_012368_020 Hb_000062_650 Hb_000062_650 Hb_003641_020--Hb_000062_650 Hb_001638_260 Hb_001638_260 Hb_003641_020--Hb_001638_260 Hb_000438_220 Hb_000438_220 Hb_003641_020--Hb_000438_220 Hb_001314_100 Hb_001314_100 Hb_003641_020--Hb_001314_100 Hb_012573_070 Hb_012573_070 Hb_003641_020--Hb_012573_070 Hb_000099_060 Hb_000099_060 Hb_009787_040--Hb_000099_060 Hb_009787_040--Hb_000970_010 Hb_000563_240 Hb_000563_240 Hb_009787_040--Hb_000563_240 Hb_019253_030 Hb_019253_030 Hb_009787_040--Hb_019253_030 Hb_155764_020 Hb_155764_020 Hb_009787_040--Hb_155764_020 Hb_005590_020 Hb_005590_020 Hb_009787_040--Hb_005590_020 Hb_001828_090 Hb_001828_090 Hb_007101_150--Hb_001828_090 Hb_000056_340 Hb_000056_340 Hb_007101_150--Hb_000056_340 Hb_001512_070 Hb_001512_070 Hb_007101_150--Hb_001512_070 Hb_001257_080 Hb_001257_080 Hb_007101_150--Hb_001257_080 Hb_003018_200 Hb_003018_200 Hb_007101_150--Hb_003018_200 Hb_007741_050 Hb_007741_050 Hb_007101_150--Hb_007741_050 Hb_000134_330 Hb_000134_330 Hb_000025_600--Hb_000134_330 Hb_002296_060 Hb_002296_060 Hb_000025_600--Hb_002296_060 Hb_000025_600--Hb_001818_020 Hb_001268_140 Hb_001268_140 Hb_000025_600--Hb_001268_140 Hb_005701_020 Hb_005701_020 Hb_000025_600--Hb_005701_020 Hb_001300_270 Hb_001300_270 Hb_000025_600--Hb_001300_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.9888 3.46268 5.4148 5.11104 12.1024 5.66702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6614 35.5104 12.1525 4.84286 1.00864

CAGE analysis