Hb_001085_100

Information

Type -
Description -
Location Contig1085: 63275-65363
Sequence    

Annotation

kegg
ID sly:104646181
description uncharacterized LOC104646181
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DNQ8
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003150 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001085_100 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_001832_020 0.1113440479 - - PREDICTED: uncharacterized protein LOC104584029 [Brachypodium distachyon]
3 Hb_008479_020 0.1371122999 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
4 Hb_001856_090 0.1682530082 - - Cellulose synthase-like B3, putative isoform 2 [Theobroma cacao]
5 Hb_009813_080 0.2233928796 - - hypothetical protein CISIN_1g045991mg [Citrus sinensis]
6 Hb_002311_170 0.225346626 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Eucalyptus grandis]
7 Hb_027472_230 0.2394129886 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
8 Hb_008289_050 0.2615716914 - - hypothetical protein B456_001G045900 [Gossypium raimondii]
9 Hb_001703_110 0.2676201034 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
10 Hb_011689_140 0.2696258072 - - PREDICTED: probable prolyl 4-hydroxylase 4 [Jatropha curcas]
11 Hb_032631_010 0.2714533423 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]
12 Hb_003435_060 0.2828270476 - - carbonic anhydrase, putative [Ricinus communis]
13 Hb_001720_060 0.2853265257 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
14 Hb_007101_290 0.2968361706 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
15 Hb_001211_020 0.3015052096 transcription factor TF Family: MYB hypothetical protein POPTR_0002s11440g [Populus trichocarpa]
16 Hb_011077_020 0.3053028565 - - kinase, putative [Ricinus communis]
17 Hb_004195_180 0.310879097 - - unnamed protein product [Coffea canephora]
18 Hb_001391_120 0.3168658089 - - Acetyl esterase, putative [Ricinus communis]
19 Hb_000597_110 0.3184621811 - - PREDICTED: VQ motif-containing protein 22-like [Jatropha curcas]
20 Hb_002315_070 0.3212375396 - - PREDICTED: uncharacterized protein LOC105630187 [Jatropha curcas]

Gene co-expression network

sample Hb_001085_100 Hb_001085_100 Hb_001832_020 Hb_001832_020 Hb_001085_100--Hb_001832_020 Hb_008479_020 Hb_008479_020 Hb_001085_100--Hb_008479_020 Hb_001856_090 Hb_001856_090 Hb_001085_100--Hb_001856_090 Hb_009813_080 Hb_009813_080 Hb_001085_100--Hb_009813_080 Hb_002311_170 Hb_002311_170 Hb_001085_100--Hb_002311_170 Hb_027472_230 Hb_027472_230 Hb_001085_100--Hb_027472_230 Hb_001832_020--Hb_008479_020 Hb_001832_020--Hb_001856_090 Hb_001832_020--Hb_027472_230 Hb_032631_010 Hb_032631_010 Hb_001832_020--Hb_032631_010 Hb_001045_050 Hb_001045_050 Hb_001832_020--Hb_001045_050 Hb_008479_020--Hb_009813_080 Hb_008479_020--Hb_002311_170 Hb_003052_230 Hb_003052_230 Hb_008479_020--Hb_003052_230 Hb_008479_020--Hb_027472_230 Hb_001856_090--Hb_032631_010 Hb_001211_020 Hb_001211_020 Hb_001856_090--Hb_001211_020 Hb_000597_110 Hb_000597_110 Hb_001856_090--Hb_000597_110 Hb_000220_160 Hb_000220_160 Hb_001856_090--Hb_000220_160 Hb_009813_080--Hb_002311_170 Hb_009813_080--Hb_003052_230 Hb_003960_020 Hb_003960_020 Hb_009813_080--Hb_003960_020 Hb_011077_020 Hb_011077_020 Hb_009813_080--Hb_011077_020 Hb_002311_170--Hb_003960_020 Hb_002311_170--Hb_003052_230 Hb_002311_170--Hb_011077_020 Hb_004195_180 Hb_004195_180 Hb_027472_230--Hb_004195_180 Hb_008289_050 Hb_008289_050 Hb_027472_230--Hb_008289_050 Hb_001720_060 Hb_001720_060 Hb_027472_230--Hb_001720_060 Hb_000390_260 Hb_000390_260 Hb_027472_230--Hb_000390_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0406221 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0364956 0 0.0586099 0

CAGE analysis