Hb_001085_110

Information

Type -
Description -
Location Contig1085: 79302-87959
Sequence    

Annotation

kegg
ID csv:101220517
description uncharacterized LOC101220517
nr
ID AAF79822.1
description T6D22.2 [Arabidopsis thaliana]
swissprot
ID O64937
description Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2
trembl
ID D7KHX2
description Elongation factor 1-alpha OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_311847 PE=3 SV=1
Gene Ontology
ID GO:0003746
description elongation factor 1-alpha

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02563: 79419-82060 , PASA_asmbl_02564: 85082-87593 , PASA_asmbl_02565: 85846-86482
cDNA
(Sanger)
(ID:Location)		 006_D11.ab1: 85082-86603 , 026_D09.ab1: 79424-80959 , 029_P04.ab1: 85082-86583 , 034_J22.ab1: 86972-87531 , 041_P17.ab1: 79419-80936

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001085_110 0.0 - - T6D22.2 [Arabidopsis thaliana]
2 Hb_009252_050 0.0485692608 - - protein binding protein, putative [Ricinus communis]
3 Hb_004109_370 0.0492739633 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
4 Hb_000243_300 0.0688661738 - - catalytic, putative [Ricinus communis]
5 Hb_003124_160 0.0724460652 - - dynamin, putative [Ricinus communis]
6 Hb_007657_020 0.0738260177 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
7 Hb_008397_010 0.0755816073 - - PREDICTED: uncharacterized protein LOC105640192 isoform X2 [Jatropha curcas]
8 Hb_000261_240 0.0767734741 - - RecName: Full=Elongation factor 1-alpha; Short=EF-1-alpha [Manihot esculenta]
9 Hb_004204_130 0.0768203535 - - PREDICTED: uncharacterized protein LOC103930912 [Pyrus x bretschneideri]
10 Hb_002045_250 0.077204419 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
11 Hb_002311_290 0.0782156105 - - PREDICTED: pumilio homolog 24 [Jatropha curcas]
12 Hb_000139_130 0.0801285564 - - PREDICTED: chloride channel protein CLC-d isoform X1 [Jatropha curcas]
13 Hb_003943_010 0.083072667 - - conserved hypothetical protein [Ricinus communis]
14 Hb_013358_070 0.083118041 - - protein with unknown function [Ricinus communis]
15 Hb_002849_170 0.0833920503 - - PREDICTED: uncharacterized protein LOC105642955 isoform X1 [Jatropha curcas]
16 Hb_000001_170 0.0845146934 - - amino acid transporter, putative [Ricinus communis]
17 Hb_000398_080 0.0848294632 - - tip120, putative [Ricinus communis]
18 Hb_008948_140 0.0851071972 - - PREDICTED: nuclear pore complex protein NUP205 [Jatropha curcas]
19 Hb_004429_010 0.0852418739 - - calcineurin-like phosphoesterase [Manihot esculenta]
20 Hb_005402_040 0.0857068211 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001085_110 Hb_001085_110 Hb_009252_050 Hb_009252_050 Hb_001085_110--Hb_009252_050 Hb_004109_370 Hb_004109_370 Hb_001085_110--Hb_004109_370 Hb_000243_300 Hb_000243_300 Hb_001085_110--Hb_000243_300 Hb_003124_160 Hb_003124_160 Hb_001085_110--Hb_003124_160 Hb_007657_020 Hb_007657_020 Hb_001085_110--Hb_007657_020 Hb_008397_010 Hb_008397_010 Hb_001085_110--Hb_008397_010 Hb_134362_010 Hb_134362_010 Hb_009252_050--Hb_134362_010 Hb_004429_010 Hb_004429_010 Hb_009252_050--Hb_004429_010 Hb_000479_240 Hb_000479_240 Hb_009252_050--Hb_000479_240 Hb_009252_050--Hb_004109_370 Hb_004204_130 Hb_004204_130 Hb_009252_050--Hb_004204_130 Hb_140049_080 Hb_140049_080 Hb_004109_370--Hb_140049_080 Hb_061878_010 Hb_061878_010 Hb_004109_370--Hb_061878_010 Hb_001552_030 Hb_001552_030 Hb_004109_370--Hb_001552_030 Hb_000139_130 Hb_000139_130 Hb_004109_370--Hb_000139_130 Hb_141069_010 Hb_141069_010 Hb_000243_300--Hb_141069_010 Hb_000243_300--Hb_004109_370 Hb_000243_300--Hb_009252_050 Hb_188063_050 Hb_188063_050 Hb_000243_300--Hb_188063_050 Hb_039946_050 Hb_039946_050 Hb_000243_300--Hb_039946_050 Hb_000176_130 Hb_000176_130 Hb_003124_160--Hb_000176_130 Hb_003124_160--Hb_004429_010 Hb_002027_280 Hb_002027_280 Hb_003124_160--Hb_002027_280 Hb_011202_020 Hb_011202_020 Hb_003124_160--Hb_011202_020 Hb_005402_040 Hb_005402_040 Hb_003124_160--Hb_005402_040 Hb_000261_030 Hb_000261_030 Hb_003124_160--Hb_000261_030 Hb_000398_080 Hb_000398_080 Hb_007657_020--Hb_000398_080 Hb_002681_090 Hb_002681_090 Hb_007657_020--Hb_002681_090 Hb_000261_240 Hb_000261_240 Hb_007657_020--Hb_000261_240 Hb_002311_290 Hb_002311_290 Hb_007657_020--Hb_002311_290 Hb_000603_030 Hb_000603_030 Hb_007657_020--Hb_000603_030 Hb_000089_120 Hb_000089_120 Hb_007657_020--Hb_000089_120 Hb_000640_070 Hb_000640_070 Hb_008397_010--Hb_000640_070 Hb_001194_020 Hb_001194_020 Hb_008397_010--Hb_001194_020 Hb_000336_020 Hb_000336_020 Hb_008397_010--Hb_000336_020 Hb_000284_230 Hb_000284_230 Hb_008397_010--Hb_000284_230 Hb_073973_150 Hb_073973_150 Hb_008397_010--Hb_073973_150 Hb_007894_160 Hb_007894_160 Hb_008397_010--Hb_007894_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
133.632 220.675 159.204 207.164 183.073 196.574
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
82.8461 86.3271 52.0607 226.104 165.913

CAGE analysis