Hb_001085_120

Information

Type -
Description -
Location Contig1085: 89356-93751
Sequence    

Annotation

kegg
ID rcu:RCOM_1019110
description hypothetical protein
nr
ID XP_012071122.1
description PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
swissprot
ID Q9P2Y5
description UV radiation resistance-associated gene protein OS=Homo sapiens GN=UVRAG PE=1 SV=1
trembl
ID A0A067KT16
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01113 PE=4 SV=1
Gene Ontology
ID GO:0010508
description uv radiation resistance-associated gene protein isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02566: 89409-93748
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001085_120 0.0 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
2 Hb_000453_120 0.0614649524 - - PREDICTED: proteasome subunit alpha type-3 [Jatropha curcas]
3 Hb_000103_010 0.0618131009 - - 20S proteasome beta subunit D2 [Hevea brasiliensis]
4 Hb_001484_070 0.06346944 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001512_080 0.065180666 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
6 Hb_001776_160 0.0654340933 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
7 Hb_000417_360 0.0700040684 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
8 Hb_004375_140 0.0720034688 - - PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Jatropha curcas]
9 Hb_000567_410 0.0721831624 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
10 Hb_000086_280 0.072298936 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Gossypium raimondii]
11 Hb_000920_110 0.0757799107 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
12 Hb_004567_120 0.0759969517 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
13 Hb_003077_040 0.0765297699 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
14 Hb_005568_120 0.0766737856 - - Prephenate dehydratase [Hevea brasiliensis]
15 Hb_012753_160 0.0768952077 - - ara4-interacting protein, putative [Ricinus communis]
16 Hb_000181_300 0.0771368481 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
17 Hb_017948_010 0.0777818761 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
18 Hb_002110_200 0.0782607756 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_005181_030 0.078451056 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
20 Hb_005883_100 0.0789805352 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001085_120 Hb_001085_120 Hb_000453_120 Hb_000453_120 Hb_001085_120--Hb_000453_120 Hb_000103_010 Hb_000103_010 Hb_001085_120--Hb_000103_010 Hb_001484_070 Hb_001484_070 Hb_001085_120--Hb_001484_070 Hb_001512_080 Hb_001512_080 Hb_001085_120--Hb_001512_080 Hb_001776_160 Hb_001776_160 Hb_001085_120--Hb_001776_160 Hb_000417_360 Hb_000417_360 Hb_001085_120--Hb_000417_360 Hb_000453_120--Hb_001484_070 Hb_000453_120--Hb_001512_080 Hb_002110_200 Hb_002110_200 Hb_000453_120--Hb_002110_200 Hb_000086_280 Hb_000086_280 Hb_000453_120--Hb_000086_280 Hb_003077_040 Hb_003077_040 Hb_000453_120--Hb_003077_040 Hb_000193_120 Hb_000193_120 Hb_000103_010--Hb_000193_120 Hb_000181_300 Hb_000181_300 Hb_000103_010--Hb_000181_300 Hb_004375_140 Hb_004375_140 Hb_000103_010--Hb_004375_140 Hb_000103_010--Hb_003077_040 Hb_005181_030 Hb_005181_030 Hb_000103_010--Hb_005181_030 Hb_000920_110 Hb_000920_110 Hb_001484_070--Hb_000920_110 Hb_000261_140 Hb_000261_140 Hb_001484_070--Hb_000261_140 Hb_001979_040 Hb_001979_040 Hb_001484_070--Hb_001979_040 Hb_002056_050 Hb_002056_050 Hb_001484_070--Hb_002056_050 Hb_001512_080--Hb_002110_200 Hb_000224_140 Hb_000224_140 Hb_001512_080--Hb_000224_140 Hb_000254_050 Hb_000254_050 Hb_001512_080--Hb_000254_050 Hb_027654_050 Hb_027654_050 Hb_001512_080--Hb_027654_050 Hb_006831_120 Hb_006831_120 Hb_001776_160--Hb_006831_120 Hb_001776_160--Hb_027654_050 Hb_001776_160--Hb_002110_200 Hb_001776_160--Hb_001512_080 Hb_002742_090 Hb_002742_090 Hb_001776_160--Hb_002742_090 Hb_010175_040 Hb_010175_040 Hb_000417_360--Hb_010175_040 Hb_091433_020 Hb_091433_020 Hb_000417_360--Hb_091433_020 Hb_000417_360--Hb_000920_110 Hb_000731_190 Hb_000731_190 Hb_000417_360--Hb_000731_190 Hb_000417_360--Hb_000261_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.65148 3.63118 6.25857 6.46816 5.80318 7.41236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.6227 26.0982 16.8552 7.52326 5.59255

CAGE analysis