Hb_001085_170

Information

Type -
Description -
Location Contig1085: 119574-126179
Sequence    

Annotation

kegg
ID rcu:RCOM_1019320
description hypothetical protein
nr
ID XP_012071132.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
swissprot
ID Q8W4N3
description Ubiquitin carboxyl-terminal hydrolase 2 OS=Arabidopsis thaliana GN=UBP2 PE=1 SV=2
trembl
ID A0A067L5H9
description Ubiquitin carboxyl-terminal hydrolase OS=Jatropha curcas GN=JCGZ_01121 PE=3 SV=1
Gene Ontology
ID GO:0008234
description ubiquitin carboxyl-terminal hydrolase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02574: 119987-123329 , PASA_asmbl_02575: 122065-122313 , PASA_asmbl_02577: 124230-124941 , PASA_asmbl_02578: 125107-125753
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001085_170 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
2 Hb_006922_030 0.0638394311 - - ubiquitin, putative [Ricinus communis]
3 Hb_007558_140 0.0740163317 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
4 Hb_002006_090 0.0741818012 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Jatropha curcas]
5 Hb_000614_230 0.0742618209 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
6 Hb_011918_080 0.0749499947 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
7 Hb_000179_210 0.0785534135 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
8 Hb_029584_130 0.0850175485 - - PREDICTED: uncharacterized protein LOC105637865 [Jatropha curcas]
9 Hb_002477_160 0.0856223143 - - hypothetical protein L484_013453 [Morus notabilis]
10 Hb_001329_300 0.087435571 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
11 Hb_000110_160 0.0892913492 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000898_040 0.0913874083 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_000207_250 0.0918048477 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
14 Hb_008695_210 0.0919546352 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
15 Hb_002307_100 0.0928887402 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
16 Hb_001975_160 0.0939492555 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000754_060 0.0941149665 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
18 Hb_000934_270 0.0941588687 - - PREDICTED: pentatricopeptide repeat-containing protein At3g21470 [Populus euphratica]
19 Hb_000001_140 0.094846748 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
20 Hb_015306_020 0.0966669774 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001085_170 Hb_001085_170 Hb_006922_030 Hb_006922_030 Hb_001085_170--Hb_006922_030 Hb_007558_140 Hb_007558_140 Hb_001085_170--Hb_007558_140 Hb_002006_090 Hb_002006_090 Hb_001085_170--Hb_002006_090 Hb_000614_230 Hb_000614_230 Hb_001085_170--Hb_000614_230 Hb_011918_080 Hb_011918_080 Hb_001085_170--Hb_011918_080 Hb_000179_210 Hb_000179_210 Hb_001085_170--Hb_000179_210 Hb_006922_030--Hb_002006_090 Hb_007416_270 Hb_007416_270 Hb_006922_030--Hb_007416_270 Hb_000001_140 Hb_000001_140 Hb_006922_030--Hb_000001_140 Hb_008695_210 Hb_008695_210 Hb_006922_030--Hb_008695_210 Hb_006922_030--Hb_000614_230 Hb_007558_140--Hb_011918_080 Hb_002477_160 Hb_002477_160 Hb_007558_140--Hb_002477_160 Hb_002307_100 Hb_002307_100 Hb_007558_140--Hb_002307_100 Hb_153258_010 Hb_153258_010 Hb_007558_140--Hb_153258_010 Hb_000997_210 Hb_000997_210 Hb_007558_140--Hb_000997_210 Hb_001329_300 Hb_001329_300 Hb_002006_090--Hb_001329_300 Hb_002006_090--Hb_000614_230 Hb_002006_090--Hb_008695_210 Hb_002006_090--Hb_000001_140 Hb_006915_050 Hb_006915_050 Hb_002006_090--Hb_006915_050 Hb_000614_230--Hb_008695_210 Hb_000567_260 Hb_000567_260 Hb_000614_230--Hb_000567_260 Hb_000614_230--Hb_001329_300 Hb_003266_130 Hb_003266_130 Hb_000614_230--Hb_003266_130 Hb_011918_080--Hb_002477_160 Hb_015306_020 Hb_015306_020 Hb_011918_080--Hb_015306_020 Hb_000110_160 Hb_000110_160 Hb_011918_080--Hb_000110_160 Hb_004046_010 Hb_004046_010 Hb_011918_080--Hb_004046_010 Hb_011918_080--Hb_001329_300 Hb_006501_040 Hb_006501_040 Hb_000179_210--Hb_006501_040 Hb_178968_110 Hb_178968_110 Hb_000179_210--Hb_178968_110 Hb_000059_220 Hb_000059_220 Hb_000179_210--Hb_000059_220 Hb_000457_150 Hb_000457_150 Hb_000179_210--Hb_000457_150 Hb_003297_030 Hb_003297_030 Hb_000179_210--Hb_003297_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.2416 5.47492 1.87838 4.57921 9.86828 12.3989
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.4731 8.08945 21.0803 4.33179 4.26335

CAGE analysis