Hb_001085_180

Information

Type -
Description -
Location Contig1085: 128737-131300
Sequence    

Annotation

kegg
ID rcu:RCOM_1719540
description hypothetical protein
nr
ID XP_002521083.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S514
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1719540 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02579: 130967-131793
cDNA
(Sanger)
(ID:Location)		 030_G07.ab1: 130996-131730 , 050_A14.ab1: 130974-131791

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001085_180 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012305_020 0.1312432603 - - beta-1,3-glucanase [Hevea brasiliensis]
3 Hb_183612_090 0.1566083743 - - -
4 Hb_004968_070 0.1739799574 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000284_190 0.1808049028 - - lactoylglutathione lyase, putative [Ricinus communis]
6 Hb_061383_010 0.1833506644 - - beta-1,3-glucanase [Hevea brasiliensis]
7 Hb_032202_250 0.1934812583 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
8 Hb_000012_070 0.1935338359 - - cytochrome P450, putative [Ricinus communis]
9 Hb_183612_080 0.1955086705 - - hypothetical protein POPTR_0001s00500g [Populus trichocarpa]
10 Hb_001266_030 0.1972781241 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like [Jatropha curcas]
11 Hb_000258_180 0.2014089017 - - PREDICTED: glutathione S-transferase U10-like [Vitis vinifera]
12 Hb_086692_020 0.2039170209 - - PREDICTED: protein kinase APK1B, chloroplastic-like [Jatropha curcas]
13 Hb_027892_040 0.2081737635 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
14 Hb_012573_010 0.2089069965 - - PREDICTED: uncharacterized protein LOC105639338 [Jatropha curcas]
15 Hb_044653_060 0.2104908218 - - PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
16 Hb_000045_210 0.2113868226 - - -
17 Hb_001842_080 0.2115467435 - - -
18 Hb_001102_100 0.2163832323 - - PREDICTED: uncharacterized protein LOC105140429 isoform X2 [Populus euphratica]
19 Hb_004159_050 0.2260034073 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000270_730 0.2273349874 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Jatropha curcas]

Gene co-expression network

sample Hb_001085_180 Hb_001085_180 Hb_012305_020 Hb_012305_020 Hb_001085_180--Hb_012305_020 Hb_183612_090 Hb_183612_090 Hb_001085_180--Hb_183612_090 Hb_004968_070 Hb_004968_070 Hb_001085_180--Hb_004968_070 Hb_000284_190 Hb_000284_190 Hb_001085_180--Hb_000284_190 Hb_061383_010 Hb_061383_010 Hb_001085_180--Hb_061383_010 Hb_032202_250 Hb_032202_250 Hb_001085_180--Hb_032202_250 Hb_012305_020--Hb_061383_010 Hb_086692_020 Hb_086692_020 Hb_012305_020--Hb_086692_020 Hb_012305_020--Hb_183612_090 Hb_001266_030 Hb_001266_030 Hb_012305_020--Hb_001266_030 Hb_000062_300 Hb_000062_300 Hb_012305_020--Hb_000062_300 Hb_003060_040 Hb_003060_040 Hb_183612_090--Hb_003060_040 Hb_183612_090--Hb_061383_010 Hb_003913_050 Hb_003913_050 Hb_183612_090--Hb_003913_050 Hb_091433_030 Hb_091433_030 Hb_183612_090--Hb_091433_030 Hb_002784_150 Hb_002784_150 Hb_004968_070--Hb_002784_150 Hb_010589_050 Hb_010589_050 Hb_004968_070--Hb_010589_050 Hb_058143_010 Hb_058143_010 Hb_004968_070--Hb_058143_010 Hb_004968_070--Hb_032202_250 Hb_001842_080 Hb_001842_080 Hb_004968_070--Hb_001842_080 Hb_001277_080 Hb_001277_080 Hb_004968_070--Hb_001277_080 Hb_000012_070 Hb_000012_070 Hb_000284_190--Hb_000012_070 Hb_012573_010 Hb_012573_010 Hb_000284_190--Hb_012573_010 Hb_000258_180 Hb_000258_180 Hb_000284_190--Hb_000258_180 Hb_000284_190--Hb_001266_030 Hb_000284_190--Hb_032202_250 Hb_061383_010--Hb_086692_020 Hb_002150_050 Hb_002150_050 Hb_061383_010--Hb_002150_050 Hb_001396_090 Hb_001396_090 Hb_061383_010--Hb_001396_090 Hb_038134_010 Hb_038134_010 Hb_061383_010--Hb_038134_010 Hb_003226_240 Hb_003226_240 Hb_032202_250--Hb_003226_240 Hb_032202_250--Hb_001842_080 Hb_000300_210 Hb_000300_210 Hb_032202_250--Hb_000300_210 Hb_001433_100 Hb_001433_100 Hb_032202_250--Hb_001433_100 Hb_034482_040 Hb_034482_040 Hb_032202_250--Hb_034482_040 Hb_002989_040 Hb_002989_040 Hb_032202_250--Hb_002989_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.931164 0 0.0860598 3.6483 1.89162 8.16325
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.9759 180.907 16.2531 8.17514 2.2251

CAGE analysis