Hb_001085_240

Information

Type -
Description -
Location Contig1085: 176348-179880
Sequence    

Annotation

kegg
ID pop:POPTR_0001s32210g
description POPTRDRAFT_845806; hypothetical protein
nr
ID XP_012071147.1
description PREDICTED: probable calcium-binding protein CML22 isoform X1 [Jatropha curcas]
swissprot
ID Q9LRN6
description Probable calcium-binding protein CML22 OS=Arabidopsis thaliana GN=CML22 PE=3 SV=1
trembl
ID B9GFX4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s32210g PE=4 SV=2
Gene Ontology
ID GO:0005509
description probable calcium-binding protein cml22 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02591: 176335-179915 , PASA_asmbl_02592: 177648-178055
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001085_240 0.0 - - PREDICTED: probable calcium-binding protein CML22 isoform X1 [Jatropha curcas]
2 Hb_003633_050 0.0492348557 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
3 Hb_000096_160 0.0605451192 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
4 Hb_000094_210 0.0849400317 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
5 Hb_000228_110 0.0859485859 - - unnamed protein product [Vitis vinifera]
6 Hb_002675_140 0.0859709069 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
7 Hb_005914_170 0.091485926 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
8 Hb_001348_020 0.093042045 - - PREDICTED: uncharacterized protein LOC105638926 isoform X2 [Jatropha curcas]
9 Hb_010560_050 0.0932190324 - - PREDICTED: acyl-protein thioesterase 1-like [Jatropha curcas]
10 Hb_000095_080 0.0932895221 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Jatropha curcas]
11 Hb_000181_050 0.0939952687 - - PREDICTED: uncharacterized protein LOC105637463 [Jatropha curcas]
12 Hb_011344_190 0.0940761754 - - PREDICTED: maspardin [Jatropha curcas]
13 Hb_019654_030 0.094120893 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
14 Hb_002631_010 0.0965145651 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
15 Hb_001157_110 0.0965198669 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
16 Hb_000115_150 0.0973137091 - - PREDICTED: IST1 homolog [Jatropha curcas]
17 Hb_001104_100 0.0973868958 - - RecName: Full=Enolase 2; AltName: Full=2-phospho-D-glycerate hydro-lyase 2; AltName: Full=2-phosphoglycerate dehydratase 2; AltName: Allergen=Hev b 9 [Hevea brasiliensis]
18 Hb_031862_100 0.0975988026 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000286_060 0.1000845231 - - PREDICTED: uncharacterized protein LOC105633357 [Jatropha curcas]
20 Hb_000665_050 0.1002663322 - - PREDICTED: aberrant root formation protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_001085_240 Hb_001085_240 Hb_003633_050 Hb_003633_050 Hb_001085_240--Hb_003633_050 Hb_000096_160 Hb_000096_160 Hb_001085_240--Hb_000096_160 Hb_000094_210 Hb_000094_210 Hb_001085_240--Hb_000094_210 Hb_000228_110 Hb_000228_110 Hb_001085_240--Hb_000228_110 Hb_002675_140 Hb_002675_140 Hb_001085_240--Hb_002675_140 Hb_005914_170 Hb_005914_170 Hb_001085_240--Hb_005914_170 Hb_003633_050--Hb_000096_160 Hb_003633_050--Hb_005914_170 Hb_011344_190 Hb_011344_190 Hb_003633_050--Hb_011344_190 Hb_003376_250 Hb_003376_250 Hb_003633_050--Hb_003376_250 Hb_019654_030 Hb_019654_030 Hb_003633_050--Hb_019654_030 Hb_000096_160--Hb_005914_170 Hb_000096_160--Hb_000228_110 Hb_001157_110 Hb_001157_110 Hb_000096_160--Hb_001157_110 Hb_000103_270 Hb_000103_270 Hb_000096_160--Hb_000103_270 Hb_000069_210 Hb_000069_210 Hb_000094_210--Hb_000069_210 Hb_002631_010 Hb_002631_010 Hb_000094_210--Hb_002631_010 Hb_007416_090 Hb_007416_090 Hb_000094_210--Hb_007416_090 Hb_000094_210--Hb_003633_050 Hb_000025_190 Hb_000025_190 Hb_000094_210--Hb_000025_190 Hb_001348_020 Hb_001348_020 Hb_000228_110--Hb_001348_020 Hb_019053_030 Hb_019053_030 Hb_000228_110--Hb_019053_030 Hb_002889_030 Hb_002889_030 Hb_000228_110--Hb_002889_030 Hb_000228_110--Hb_003633_050 Hb_000034_070 Hb_000034_070 Hb_002675_140--Hb_000034_070 Hb_001369_250 Hb_001369_250 Hb_002675_140--Hb_001369_250 Hb_002675_140--Hb_003633_050 Hb_001104_100 Hb_001104_100 Hb_002675_140--Hb_001104_100 Hb_000181_050 Hb_000181_050 Hb_002675_140--Hb_000181_050 Hb_000210_120 Hb_000210_120 Hb_005914_170--Hb_000210_120 Hb_011344_120 Hb_011344_120 Hb_005914_170--Hb_011344_120 Hb_001314_050 Hb_001314_050 Hb_005914_170--Hb_001314_050 Hb_031862_100 Hb_031862_100 Hb_005914_170--Hb_031862_100 Hb_023001_040 Hb_023001_040 Hb_005914_170--Hb_023001_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.91922 2.96105 4.88833 10.9257 4.51963 5.99766
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3355 8.48083 8.92476 14.7398 7.01616

CAGE analysis