Hb_001085_250

Information

Type transcription factor
Description TF Family: G2-like
Location Contig1085: 195312-202343
Sequence    

Annotation

kegg
ID rcu:RCOM_1019810
description transcription factor, putative
nr
ID XP_012071151.1
description PREDICTED: myb family transcription factor APL isoform X2 [Jatropha curcas]
swissprot
ID Q9SAK5
description Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2
trembl
ID B9RWI5
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1019810 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb family transcription factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02593: 198373-198798 , PASA_asmbl_02595: 201555-201875 , PASA_asmbl_02596: 202091-202273
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001085_250 0.0 transcription factor TF Family: G2-like PREDICTED: myb family transcription factor APL isoform X2 [Jatropha curcas]
2 Hb_007904_120 0.0652058615 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
3 Hb_007262_020 0.0866589282 - - PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Jatropha curcas]
4 Hb_001863_260 0.0912403708 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_007451_050 0.0928762475 - - PREDICTED: uncharacterized protein LOC105643409 isoform X1 [Jatropha curcas]
6 Hb_001377_320 0.0944814755 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
7 Hb_006824_060 0.1026027227 - - PREDICTED: uncharacterized protein LOC105650737 [Jatropha curcas]
8 Hb_000679_130 0.1032114416 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
9 Hb_001163_120 0.1052946703 - - WD-repeat protein, putative [Ricinus communis]
10 Hb_134364_010 0.1060770232 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Jatropha curcas]
11 Hb_012098_110 0.1094594029 - - Ribonuclease 3 [Gossypium arboreum]
12 Hb_001652_080 0.1099892005 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
13 Hb_002024_040 0.1101159206 - - PREDICTED: adenosine kinase [Jatropha curcas]
14 Hb_008253_010 0.1106869994 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
15 Hb_004570_020 0.1111347657 - - PREDICTED: protein TIC 100 [Jatropha curcas]
16 Hb_006915_060 0.1119668578 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
17 Hb_000368_020 0.1122611324 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
18 Hb_001235_200 0.1135011842 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002022_060 0.1137455072 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
20 Hb_032202_230 0.1139506656 - - peroxisomal biogenesis factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001085_250 Hb_001085_250 Hb_007904_120 Hb_007904_120 Hb_001085_250--Hb_007904_120 Hb_007262_020 Hb_007262_020 Hb_001085_250--Hb_007262_020 Hb_001863_260 Hb_001863_260 Hb_001085_250--Hb_001863_260 Hb_007451_050 Hb_007451_050 Hb_001085_250--Hb_007451_050 Hb_001377_320 Hb_001377_320 Hb_001085_250--Hb_001377_320 Hb_006824_060 Hb_006824_060 Hb_001085_250--Hb_006824_060 Hb_007904_120--Hb_001377_320 Hb_007904_120--Hb_007262_020 Hb_007007_060 Hb_007007_060 Hb_007904_120--Hb_007007_060 Hb_012098_110 Hb_012098_110 Hb_007904_120--Hb_012098_110 Hb_002022_060 Hb_002022_060 Hb_007904_120--Hb_002022_060 Hb_007262_020--Hb_012098_110 Hb_000498_010 Hb_000498_010 Hb_007262_020--Hb_000498_010 Hb_000679_130 Hb_000679_130 Hb_007262_020--Hb_000679_130 Hb_000025_110 Hb_000025_110 Hb_007262_020--Hb_000025_110 Hb_001444_010 Hb_001444_010 Hb_007262_020--Hb_001444_010 Hb_134364_010 Hb_134364_010 Hb_001863_260--Hb_134364_010 Hb_001863_260--Hb_006824_060 Hb_030827_030 Hb_030827_030 Hb_001863_260--Hb_030827_030 Hb_001863_260--Hb_007262_020 Hb_008253_010 Hb_008253_010 Hb_001863_260--Hb_008253_010 Hb_007451_050--Hb_001377_320 Hb_002024_040 Hb_002024_040 Hb_007451_050--Hb_002024_040 Hb_007451_050--Hb_000679_130 Hb_003641_050 Hb_003641_050 Hb_007451_050--Hb_003641_050 Hb_002681_050 Hb_002681_050 Hb_007451_050--Hb_002681_050 Hb_003813_040 Hb_003813_040 Hb_001377_320--Hb_003813_040 Hb_001377_320--Hb_002022_060 Hb_000777_050 Hb_000777_050 Hb_001377_320--Hb_000777_050 Hb_000368_020 Hb_000368_020 Hb_001377_320--Hb_000368_020 Hb_000189_330 Hb_000189_330 Hb_001377_320--Hb_000189_330 Hb_006824_060--Hb_000368_020 Hb_006824_060--Hb_000189_330 Hb_006824_060--Hb_007904_120 Hb_006824_060--Hb_001377_320 Hb_006824_060--Hb_008253_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.0651 9.25393 10.6304 6.36119 12.3255 21.5439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2465 4.3782 6.61836 3.81609 9.51989

CAGE analysis