Hb_001085_260

Information

Type -
Description -
Location Contig1085: 206796-212796
Sequence    

Annotation

kegg
ID rcu:RCOM_1019820
description hypothetical protein
nr
ID XP_012071153.1
description PREDICTED: uncharacterized protein LOC105633184 [Jatropha curcas]
swissprot
ID O14138
description NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC25A8.03c PE=3 SV=2
trembl
ID B9RWI6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1019820 PE=4 SV=1
Gene Ontology
ID GO:0016874
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02597: 207683-208205 , PASA_asmbl_02598: 208829-211010 , PASA_asmbl_02599: 211704-212851
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001085_260 0.0 - - PREDICTED: uncharacterized protein LOC105633184 [Jatropha curcas]
2 Hb_002485_030 0.0711467494 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
3 Hb_002960_150 0.1005836454 - - hypothetical protein CISIN_1g029215mg [Citrus sinensis]
4 Hb_003760_030 0.1013337361 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
5 Hb_002284_210 0.1017539991 - - PREDICTED: protein canopy-1 [Jatropha curcas]
6 Hb_000207_150 0.107429151 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
7 Hb_003119_090 0.1099843666 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
8 Hb_001501_080 0.110170306 - - PREDICTED: uncharacterized protein LOC105640832 isoform X1 [Jatropha curcas]
9 Hb_001517_050 0.1111984711 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
10 Hb_003943_050 0.1130298313 - - phosphoglucomutase, putative [Ricinus communis]
11 Hb_000751_030 0.1135331493 - - Vesicle transport protein GOT1B, putative [Ricinus communis]
12 Hb_007951_040 0.1154002203 - - signal peptidase family protein [Populus trichocarpa]
13 Hb_007017_080 0.1157056889 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
14 Hb_006816_100 0.1173585443 - - hypothetical protein CISIN_1g0373181mg, partial [Citrus sinensis]
15 Hb_000392_230 0.1177081792 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000058_130 0.1187101782 - - PREDICTED: uncharacterized protein LOC105640884 [Jatropha curcas]
17 Hb_000103_120 0.1210575717 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
18 Hb_000261_330 0.1221114871 - - PREDICTED: ER lumen protein-retaining receptor [Amborella trichopoda]
19 Hb_067130_010 0.1223817442 - - protein binding protein, putative [Ricinus communis]
20 Hb_000022_200 0.1231009107 - - PREDICTED: uncharacterized protein LOC105638292 [Jatropha curcas]

Gene co-expression network

sample Hb_001085_260 Hb_001085_260 Hb_002485_030 Hb_002485_030 Hb_001085_260--Hb_002485_030 Hb_002960_150 Hb_002960_150 Hb_001085_260--Hb_002960_150 Hb_003760_030 Hb_003760_030 Hb_001085_260--Hb_003760_030 Hb_002284_210 Hb_002284_210 Hb_001085_260--Hb_002284_210 Hb_000207_150 Hb_000207_150 Hb_001085_260--Hb_000207_150 Hb_003119_090 Hb_003119_090 Hb_001085_260--Hb_003119_090 Hb_002485_030--Hb_003760_030 Hb_002485_030--Hb_003119_090 Hb_006816_100 Hb_006816_100 Hb_002485_030--Hb_006816_100 Hb_000103_120 Hb_000103_120 Hb_002485_030--Hb_000103_120 Hb_000494_080 Hb_000494_080 Hb_002485_030--Hb_000494_080 Hb_000916_070 Hb_000916_070 Hb_002960_150--Hb_000916_070 Hb_124373_010 Hb_124373_010 Hb_002960_150--Hb_124373_010 Hb_007017_080 Hb_007017_080 Hb_002960_150--Hb_007017_080 Hb_000622_130 Hb_000622_130 Hb_002960_150--Hb_000622_130 Hb_010368_050 Hb_010368_050 Hb_002960_150--Hb_010368_050 Hb_003760_030--Hb_003119_090 Hb_007007_040 Hb_007007_040 Hb_003760_030--Hb_007007_040 Hb_065755_030 Hb_065755_030 Hb_003760_030--Hb_065755_030 Hb_000751_030 Hb_000751_030 Hb_003760_030--Hb_000751_030 Hb_001501_080 Hb_001501_080 Hb_003760_030--Hb_001501_080 Hb_002284_210--Hb_006816_100 Hb_002284_210--Hb_003760_030 Hb_002874_180 Hb_002874_180 Hb_002284_210--Hb_002874_180 Hb_010098_020 Hb_010098_020 Hb_002284_210--Hb_010098_020 Hb_143766_020 Hb_143766_020 Hb_002284_210--Hb_143766_020 Hb_002686_080 Hb_002686_080 Hb_002284_210--Hb_002686_080 Hb_000107_230 Hb_000107_230 Hb_000207_150--Hb_000107_230 Hb_000058_130 Hb_000058_130 Hb_000207_150--Hb_000058_130 Hb_000331_090 Hb_000331_090 Hb_000207_150--Hb_000331_090 Hb_007831_010 Hb_007831_010 Hb_000207_150--Hb_007831_010 Hb_003929_170 Hb_003929_170 Hb_000207_150--Hb_003929_170 Hb_000579_120 Hb_000579_120 Hb_000207_150--Hb_000579_120 Hb_003119_090--Hb_007007_040 Hb_003943_050 Hb_003943_050 Hb_003119_090--Hb_003943_050 Hb_023313_040 Hb_023313_040 Hb_003119_090--Hb_023313_040 Hb_003119_090--Hb_001501_080 Hb_030982_030 Hb_030982_030 Hb_003119_090--Hb_030982_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.51788 1.71562 8.7055 6.90766 3.0015 5.51831
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.26873 3.78217 2.57792 2.22069 2.4337

CAGE analysis