Hb_001085_290

Information

Type -
Description -
Location Contig1085: 220773-227691
Sequence    

Annotation

kegg
ID pop:POPTR_0017s08150g
description POPTRDRAFT_577415; 26S proteasome regulatory subunit family protein
nr
ID XP_002323770.1
description 26S proteasome regulatory subunit family protein [Populus trichocarpa]
swissprot
ID O48844
description 26S proteasome non-ATPase regulatory subunit 1 homolog A OS=Arabidopsis thaliana GN=RPN2A PE=1 SV=1
trembl
ID B9IJG7
description 26S proteasome regulatory subunit family protein OS=Populus trichocarpa GN=POPTR_0017s08150g PE=4 SV=1
Gene Ontology
ID GO:0000502
description 26s proteasome non-atpase regulatory subunit 1 homolog a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02602: 220791-227719
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001085_290 0.0 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
2 Hb_000088_050 0.0581712843 - - PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase [Jatropha curcas]
3 Hb_000017_230 0.0645264298 - - hypothetical protein JCGZ_20558 [Jatropha curcas]
4 Hb_002007_260 0.0656987374 - - beta-mannosidase, putative [Ricinus communis]
5 Hb_001552_030 0.0663323908 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
6 Hb_060980_010 0.0673492945 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
7 Hb_085742_010 0.0714364727 - - hypothetical protein POPTR_0005s05170g [Populus trichocarpa]
8 Hb_019840_030 0.0714505636 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
9 Hb_000001_170 0.0766006927 - - amino acid transporter, putative [Ricinus communis]
10 Hb_002749_060 0.0769189228 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
11 Hb_012286_040 0.0776873443 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
12 Hb_092000_010 0.0785428149 - - kelch repeat-containing F-box family protein [Populus trichocarpa]
13 Hb_007245_020 0.0790613842 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
14 Hb_002357_070 0.0795536922 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
15 Hb_001381_050 0.0800490974 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
16 Hb_008397_010 0.0825304642 - - PREDICTED: uncharacterized protein LOC105640192 isoform X2 [Jatropha curcas]
17 Hb_001307_240 0.0832834851 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
18 Hb_001377_350 0.0833593397 - - PREDICTED: exportin-2 [Jatropha curcas]
19 Hb_000003_100 0.0839453579 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
20 Hb_000270_190 0.0839606727 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001085_290 Hb_001085_290 Hb_000088_050 Hb_000088_050 Hb_001085_290--Hb_000088_050 Hb_000017_230 Hb_000017_230 Hb_001085_290--Hb_000017_230 Hb_002007_260 Hb_002007_260 Hb_001085_290--Hb_002007_260 Hb_001552_030 Hb_001552_030 Hb_001085_290--Hb_001552_030 Hb_060980_010 Hb_060980_010 Hb_001085_290--Hb_060980_010 Hb_085742_010 Hb_085742_010 Hb_001085_290--Hb_085742_010 Hb_000088_050--Hb_085742_010 Hb_000088_050--Hb_000017_230 Hb_001377_350 Hb_001377_350 Hb_000088_050--Hb_001377_350 Hb_092000_010 Hb_092000_010 Hb_000088_050--Hb_092000_010 Hb_001381_050 Hb_001381_050 Hb_000088_050--Hb_001381_050 Hb_121089_030 Hb_121089_030 Hb_000017_230--Hb_121089_030 Hb_021165_010 Hb_021165_010 Hb_000017_230--Hb_021165_010 Hb_000017_230--Hb_001552_030 Hb_000017_230--Hb_092000_010 Hb_001246_130 Hb_001246_130 Hb_002007_260--Hb_001246_130 Hb_010042_030 Hb_010042_030 Hb_002007_260--Hb_010042_030 Hb_001159_030 Hb_001159_030 Hb_002007_260--Hb_001159_030 Hb_001558_040 Hb_001558_040 Hb_002007_260--Hb_001558_040 Hb_030982_010 Hb_030982_010 Hb_002007_260--Hb_030982_010 Hb_001488_220 Hb_001488_220 Hb_001552_030--Hb_001488_220 Hb_004109_370 Hb_004109_370 Hb_001552_030--Hb_004109_370 Hb_002784_030 Hb_002784_030 Hb_001552_030--Hb_002784_030 Hb_001552_030--Hb_121089_030 Hb_016172_030 Hb_016172_030 Hb_060980_010--Hb_016172_030 Hb_027506_010 Hb_027506_010 Hb_060980_010--Hb_027506_010 Hb_019840_030 Hb_019840_030 Hb_060980_010--Hb_019840_030 Hb_065500_020 Hb_065500_020 Hb_060980_010--Hb_065500_020 Hb_000409_050 Hb_000409_050 Hb_060980_010--Hb_000409_050 Hb_000001_170 Hb_000001_170 Hb_060980_010--Hb_000001_170 Hb_000739_180 Hb_000739_180 Hb_085742_010--Hb_000739_180 Hb_000879_040 Hb_000879_040 Hb_085742_010--Hb_000879_040 Hb_085742_010--Hb_000017_230 Hb_085742_010--Hb_092000_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.3417 19.0198 20.6538 21.8289 11.2941 16.7734
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.94488 6.73245 10.8531 25.5721 21.4196

CAGE analysis