Hb_001086_030

Information

Type -
Description -
Location Contig1086: 9727-11993
Sequence    

Annotation

kegg
ID rcu:RCOM_0885080
description Disease resistance protein RPS5, putative
nr
ID XP_002522629.1
description Disease resistance protein RPS5, putative [Ricinus communis]
swissprot
ID Q9FLB4
description Putative disease resistance protein At5g05400 OS=Arabidopsis thaliana GN=At5g05400 PE=3 SV=1
trembl
ID B9S9G0
description Disease resistance protein RPS5, putative OS=Ricinus communis GN=RCOM_0885080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001086_030 0.0 - - Disease resistance protein RPS5, putative [Ricinus communis]
2 Hb_044380_020 0.145574075 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
3 Hb_006096_020 0.2051538075 - - Os06g0343500 [Oryza sativa Japonica Group]
4 Hb_006452_240 0.2121888534 - - PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X1 [Jatropha curcas]
5 Hb_003517_010 0.2129968141 - - PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]
6 Hb_102011_010 0.2140985177 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
7 Hb_000216_030 0.220475271 - - aldehyde oxidase, putative [Ricinus communis]
8 Hb_000875_070 0.2232120532 - - -
9 Hb_002122_050 0.227888942 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
10 Hb_009848_050 0.2355703973 - - PREDICTED: proline-rich receptor-like protein kinase PERK13 [Elaeis guineensis]
11 Hb_000343_100 0.2369236561 - - PREDICTED: regulator of telomere elongation helicase 1 homolog [Jatropha curcas]
12 Hb_009230_020 0.237168588 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
13 Hb_001341_020 0.2411307479 - - Uncharacterised protein [Bordetella pertussis]
14 Hb_001677_230 0.2414050435 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
15 Hb_060658_010 0.2427748174 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
16 Hb_001619_010 0.2430081002 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
17 Hb_000816_020 0.2451175401 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
18 Hb_006916_190 0.2454672228 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_011360_060 0.2543569015 - - glycogen phosphorylase, putative [Ricinus communis]
20 Hb_000668_110 0.2553835033 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001086_030 Hb_001086_030 Hb_044380_020 Hb_044380_020 Hb_001086_030--Hb_044380_020 Hb_006096_020 Hb_006096_020 Hb_001086_030--Hb_006096_020 Hb_006452_240 Hb_006452_240 Hb_001086_030--Hb_006452_240 Hb_003517_010 Hb_003517_010 Hb_001086_030--Hb_003517_010 Hb_102011_010 Hb_102011_010 Hb_001086_030--Hb_102011_010 Hb_000216_030 Hb_000216_030 Hb_001086_030--Hb_000216_030 Hb_000875_070 Hb_000875_070 Hb_044380_020--Hb_000875_070 Hb_000668_110 Hb_000668_110 Hb_044380_020--Hb_000668_110 Hb_044380_020--Hb_006452_240 Hb_003938_110 Hb_003938_110 Hb_044380_020--Hb_003938_110 Hb_000414_180 Hb_000414_180 Hb_044380_020--Hb_000414_180 Hb_000816_020 Hb_000816_020 Hb_006096_020--Hb_000816_020 Hb_001677_230 Hb_001677_230 Hb_006096_020--Hb_001677_230 Hb_012023_010 Hb_012023_010 Hb_006096_020--Hb_012023_010 Hb_001619_010 Hb_001619_010 Hb_006096_020--Hb_001619_010 Hb_082683_010 Hb_082683_010 Hb_006096_020--Hb_082683_010 Hb_000059_080 Hb_000059_080 Hb_006096_020--Hb_000059_080 Hb_007546_030 Hb_007546_030 Hb_006452_240--Hb_007546_030 Hb_003805_070 Hb_003805_070 Hb_006452_240--Hb_003805_070 Hb_000589_380 Hb_000589_380 Hb_006452_240--Hb_000589_380 Hb_001341_020 Hb_001341_020 Hb_006452_240--Hb_001341_020 Hb_001223_010 Hb_001223_010 Hb_006452_240--Hb_001223_010 Hb_000800_110 Hb_000800_110 Hb_006452_240--Hb_000800_110 Hb_008749_090 Hb_008749_090 Hb_003517_010--Hb_008749_090 Hb_149515_010 Hb_149515_010 Hb_003517_010--Hb_149515_010 Hb_005389_190 Hb_005389_190 Hb_003517_010--Hb_005389_190 Hb_003517_010--Hb_000816_020 Hb_003517_010--Hb_006096_020 Hb_029904_010 Hb_029904_010 Hb_003517_010--Hb_029904_010 Hb_001485_010 Hb_001485_010 Hb_102011_010--Hb_001485_010 Hb_053125_010 Hb_053125_010 Hb_102011_010--Hb_053125_010 Hb_001091_020 Hb_001091_020 Hb_102011_010--Hb_001091_020 Hb_136880_010 Hb_136880_010 Hb_102011_010--Hb_136880_010 Hb_102011_010--Hb_006096_020 Hb_012788_010 Hb_012788_010 Hb_102011_010--Hb_012788_010 Hb_006916_190 Hb_006916_190 Hb_000216_030--Hb_006916_190 Hb_000216_030--Hb_044380_020 Hb_000216_030--Hb_003517_010 Hb_000216_030--Hb_008749_090 Hb_001123_010 Hb_001123_010 Hb_000216_030--Hb_001123_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.373665 1.15397 0.0842673 0.495384 0.334644 0.744264
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.157964 0.0497094 0.326752 5.73514 4.15803

CAGE analysis