Hb_001087_030

Information

Type -
Description -
Location Contig1087: 26142-32673
Sequence    

Annotation

kegg
ID pop:POPTR_0003s21320g
description POPTRDRAFT_712706; hypothetical protein
nr
ID XP_012085034.1
description PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
swissprot
ID Q07100
description Serine/threonine-protein phosphatase PP2A-4 catalytic subunit OS=Arabidopsis thaliana GN=PP2A4 PE=2 SV=2
trembl
ID A0A067JVV1
description Serine/threonine-protein phosphatase OS=Jatropha curcas GN=JCGZ_21036 PE=3 SV=1
Gene Ontology
ID GO:0004721
description serine threonine-protein phosphatase pp2a catalytic subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02633: 26166-32649
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001087_030 0.0 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
2 Hb_003929_170 0.0669483952 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
3 Hb_004754_050 0.0727500452 - - PREDICTED: uncharacterized protein LOC104433925 [Eucalyptus grandis]
4 Hb_001269_330 0.0733186228 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
5 Hb_000139_530 0.0820476424 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000058_130 0.0861656418 - - PREDICTED: uncharacterized protein LOC105640884 [Jatropha curcas]
7 Hb_000049_020 0.0870037337 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
8 Hb_001863_360 0.0878078001 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
9 Hb_011310_110 0.089127023 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
10 Hb_001252_090 0.0906253523 - - GDP-D-mannose pyrophosphorylase [Camellia sinensis]
11 Hb_000256_150 0.0917508032 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
12 Hb_005276_060 0.0917988575 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
13 Hb_019181_040 0.092714613 - - component of oligomeric golgi complex, putative [Ricinus communis]
14 Hb_000494_080 0.092821126 - - Palmitoyl-protein thioesterase 1 precursor, putative [Ricinus communis]
15 Hb_012395_170 0.0932032542 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000390_250 0.096038129 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
17 Hb_159809_030 0.0960496023 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 2-like isoform X2 [Jatropha curcas]
18 Hb_000009_400 0.0964552633 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
19 Hb_084247_010 0.0964849622 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000637_110 0.0980989255 - - hypothetical protein B456_013G081300 [Gossypium raimondii]

Gene co-expression network

sample Hb_001087_030 Hb_001087_030 Hb_003929_170 Hb_003929_170 Hb_001087_030--Hb_003929_170 Hb_004754_050 Hb_004754_050 Hb_001087_030--Hb_004754_050 Hb_001269_330 Hb_001269_330 Hb_001087_030--Hb_001269_330 Hb_000139_530 Hb_000139_530 Hb_001087_030--Hb_000139_530 Hb_000058_130 Hb_000058_130 Hb_001087_030--Hb_000058_130 Hb_000049_020 Hb_000049_020 Hb_001087_030--Hb_000049_020 Hb_000046_570 Hb_000046_570 Hb_003929_170--Hb_000046_570 Hb_000207_150 Hb_000207_150 Hb_003929_170--Hb_000207_150 Hb_000009_400 Hb_000009_400 Hb_003929_170--Hb_000009_400 Hb_000390_250 Hb_000390_250 Hb_003929_170--Hb_000390_250 Hb_000107_230 Hb_000107_230 Hb_003929_170--Hb_000107_230 Hb_007975_060 Hb_007975_060 Hb_004754_050--Hb_007975_060 Hb_002157_120 Hb_002157_120 Hb_004754_050--Hb_002157_120 Hb_019181_040 Hb_019181_040 Hb_004754_050--Hb_019181_040 Hb_133702_010 Hb_133702_010 Hb_004754_050--Hb_133702_010 Hb_004754_050--Hb_000058_130 Hb_007481_010 Hb_007481_010 Hb_001269_330--Hb_007481_010 Hb_000256_150 Hb_000256_150 Hb_001269_330--Hb_000256_150 Hb_001269_330--Hb_019181_040 Hb_012498_010 Hb_012498_010 Hb_001269_330--Hb_012498_010 Hb_000046_500 Hb_000046_500 Hb_001269_330--Hb_000046_500 Hb_005797_010 Hb_005797_010 Hb_000139_530--Hb_005797_010 Hb_086639_080 Hb_086639_080 Hb_000139_530--Hb_086639_080 Hb_011214_160 Hb_011214_160 Hb_000139_530--Hb_011214_160 Hb_000139_530--Hb_000009_400 Hb_004102_170 Hb_004102_170 Hb_000139_530--Hb_004102_170 Hb_000579_120 Hb_000579_120 Hb_000058_130--Hb_000579_120 Hb_000058_130--Hb_000207_150 Hb_000058_130--Hb_002157_120 Hb_000028_520 Hb_000028_520 Hb_000058_130--Hb_000028_520 Hb_001232_190 Hb_001232_190 Hb_000058_130--Hb_001232_190 Hb_002874_180 Hb_002874_180 Hb_000058_130--Hb_002874_180 Hb_000300_270 Hb_000300_270 Hb_000049_020--Hb_000300_270 Hb_000345_160 Hb_000345_160 Hb_000049_020--Hb_000345_160 Hb_000049_020--Hb_000256_150 Hb_000049_020--Hb_004102_170 Hb_002883_030 Hb_002883_030 Hb_000049_020--Hb_002883_030 Hb_000215_300 Hb_000215_300 Hb_000049_020--Hb_000215_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.3597 20.3521 36.9376 49.9878 19.9683 21.6125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.6274 15.9166 24.1915 16.7877 26.0426

CAGE analysis