Hb_001089_070

Information

Type -
Description -
Location Contig1089: 56256-66083
Sequence    

Annotation

kegg
ID pop:POPTR_0010s14870g
description POPTRDRAFT_723872; hypothetical protein
nr
ID XP_012066449.1
description PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
swissprot
ID Q96JB2
description Conserved oligomeric Golgi complex subunit 3 OS=Homo sapiens GN=COG3 PE=1 SV=3
trembl
ID A0A067L2S6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23642 PE=4 SV=1
Gene Ontology
ID GO:0005794
description conserved oligomeric golgi complex subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02704: 56282-65328
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001089_070 0.0 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
2 Hb_016777_040 0.0667899347 - - PREDICTED: DNA polymerase eta-like [Jatropha curcas]
3 Hb_005289_040 0.0671025251 - - poly(A) polymerase, putative [Ricinus communis]
4 Hb_000603_030 0.0682416361 - - Ribonuclease III, putative [Ricinus communis]
5 Hb_001005_030 0.0696653025 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
6 Hb_021943_080 0.0713491954 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
7 Hb_005588_090 0.0736202423 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]
8 Hb_002889_010 0.0745206131 - - ubx domain-containing, putative [Ricinus communis]
9 Hb_143629_150 0.0754141782 - - PREDICTED: flap endonuclease 1 isoform X2 [Prunus mume]
10 Hb_003436_020 0.075624968 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105636276 isoform X2 [Jatropha curcas]
11 Hb_132840_010 0.0767859308 - - serine/threonine-protein kinase, putative [Ricinus communis]
12 Hb_034243_040 0.076935919 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
13 Hb_002311_310 0.0780928955 - - PREDICTED: uncharacterized protein LOC100246622 [Vitis vinifera]
14 Hb_000737_030 0.0786458955 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
15 Hb_000134_270 0.078683283 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
16 Hb_004267_040 0.0793951979 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
17 Hb_002092_130 0.0795873438 - - PREDICTED: protein CASP-like [Oryza brachyantha]
18 Hb_003186_020 0.0803273413 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
19 Hb_000563_130 0.0816068636 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
20 Hb_001821_160 0.0821578456 - - serine/arginine rich splicing factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001089_070 Hb_001089_070 Hb_016777_040 Hb_016777_040 Hb_001089_070--Hb_016777_040 Hb_005289_040 Hb_005289_040 Hb_001089_070--Hb_005289_040 Hb_000603_030 Hb_000603_030 Hb_001089_070--Hb_000603_030 Hb_001005_030 Hb_001005_030 Hb_001089_070--Hb_001005_030 Hb_021943_080 Hb_021943_080 Hb_001089_070--Hb_021943_080 Hb_005588_090 Hb_005588_090 Hb_001089_070--Hb_005588_090 Hb_002889_010 Hb_002889_010 Hb_016777_040--Hb_002889_010 Hb_002471_240 Hb_002471_240 Hb_016777_040--Hb_002471_240 Hb_001377_310 Hb_001377_310 Hb_016777_040--Hb_001377_310 Hb_000373_080 Hb_000373_080 Hb_016777_040--Hb_000373_080 Hb_002805_190 Hb_002805_190 Hb_016777_040--Hb_002805_190 Hb_003638_090 Hb_003638_090 Hb_005289_040--Hb_003638_090 Hb_005289_040--Hb_005588_090 Hb_000398_080 Hb_000398_080 Hb_005289_040--Hb_000398_080 Hb_005289_040--Hb_002805_190 Hb_000134_270 Hb_000134_270 Hb_005289_040--Hb_000134_270 Hb_154580_010 Hb_154580_010 Hb_005289_040--Hb_154580_010 Hb_000603_030--Hb_000398_080 Hb_028872_070 Hb_028872_070 Hb_000603_030--Hb_028872_070 Hb_007657_020 Hb_007657_020 Hb_000603_030--Hb_007657_020 Hb_002681_090 Hb_002681_090 Hb_000603_030--Hb_002681_090 Hb_000563_130 Hb_000563_130 Hb_000603_030--Hb_000563_130 Hb_004267_040 Hb_004267_040 Hb_000603_030--Hb_004267_040 Hb_000362_170 Hb_000362_170 Hb_001005_030--Hb_000362_170 Hb_001005_030--Hb_000373_080 Hb_001269_230 Hb_001269_230 Hb_001005_030--Hb_001269_230 Hb_001635_040 Hb_001635_040 Hb_001005_030--Hb_001635_040 Hb_004912_030 Hb_004912_030 Hb_001005_030--Hb_004912_030 Hb_003186_020 Hb_003186_020 Hb_001005_030--Hb_003186_020 Hb_001158_160 Hb_001158_160 Hb_021943_080--Hb_001158_160 Hb_000120_210 Hb_000120_210 Hb_021943_080--Hb_000120_210 Hb_021943_080--Hb_016777_040 Hb_004096_240 Hb_004096_240 Hb_021943_080--Hb_004096_240 Hb_077026_010 Hb_077026_010 Hb_021943_080--Hb_077026_010 Hb_005588_090--Hb_004267_040 Hb_116349_070 Hb_116349_070 Hb_005588_090--Hb_116349_070 Hb_004785_100 Hb_004785_100 Hb_005588_090--Hb_004785_100 Hb_000089_120 Hb_000089_120 Hb_005588_090--Hb_000089_120 Hb_001821_160 Hb_001821_160 Hb_005588_090--Hb_001821_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5816 8.63941 17.2552 10.7875 16.1929 12.3731
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.13839 7.16633 5.79303 14.4345 12.0772

CAGE analysis