Hb_001089_080

Information

Type -
Description -
Location Contig1089: 66845-67143
Sequence    

Annotation

kegg
ID pps:100983981
description MSTO1; protein misato homolog 1
nr
ID KHN11025.1
description hypothetical protein glysoja_044047 [Glycine soja]
swissprot
ID -
description -
trembl
ID M0RM24
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID GO:0005739
description protein misato homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02706: 65500-82407
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001089_080 0.0 - - hypothetical protein glysoja_044047 [Glycine soja]
2 Hb_021943_070 0.1792096011 - - -
3 Hb_005107_020 0.194594611 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
4 Hb_001579_260 0.2009155887 - - putative ADP-ribolylation factor [Arabidopsis thaliana]
5 Hb_022891_010 0.2010801807 - - chitinase-like protein [Hevea brasiliensis]
6 Hb_130367_010 0.2059773795 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
7 Hb_008096_020 0.208880408 - - -
8 Hb_000034_090 0.2128975813 transcription factor TF Family: M-type MPF2-like, partial [Dunalia fasciculata]
9 Hb_003030_040 0.2191131553 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
10 Hb_000953_120 0.2217770777 - - -
11 Hb_041601_010 0.2247371306 - - -
12 Hb_007188_030 0.2248533848 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
13 Hb_002732_020 0.2288970276 - - -
14 Hb_003656_150 0.2319141274 - - -
15 Hb_029142_020 0.240304325 - - hypothetical protein POPTR_0004s23900g [Populus trichocarpa]
16 Hb_012675_080 0.2403170098 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
17 Hb_001584_320 0.2444895471 - - PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas]
18 Hb_002815_050 0.2452858425 - - PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]
19 Hb_002079_040 0.2462184428 - - hypothetical protein VITISV_018542 [Vitis vinifera]
20 Hb_002972_060 0.2466073825 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001089_080 Hb_001089_080 Hb_021943_070 Hb_021943_070 Hb_001089_080--Hb_021943_070 Hb_005107_020 Hb_005107_020 Hb_001089_080--Hb_005107_020 Hb_001579_260 Hb_001579_260 Hb_001089_080--Hb_001579_260 Hb_022891_010 Hb_022891_010 Hb_001089_080--Hb_022891_010 Hb_130367_010 Hb_130367_010 Hb_001089_080--Hb_130367_010 Hb_008096_020 Hb_008096_020 Hb_001089_080--Hb_008096_020 Hb_021943_070--Hb_008096_020 Hb_002972_060 Hb_002972_060 Hb_021943_070--Hb_002972_060 Hb_103093_010 Hb_103093_010 Hb_021943_070--Hb_103093_010 Hb_000084_130 Hb_000084_130 Hb_021943_070--Hb_000084_130 Hb_002732_020 Hb_002732_020 Hb_021943_070--Hb_002732_020 Hb_000034_090 Hb_000034_090 Hb_005107_020--Hb_000034_090 Hb_006162_020 Hb_006162_020 Hb_005107_020--Hb_006162_020 Hb_006794_010 Hb_006794_010 Hb_005107_020--Hb_006794_010 Hb_012675_080 Hb_012675_080 Hb_005107_020--Hb_012675_080 Hb_011200_010 Hb_011200_010 Hb_005107_020--Hb_011200_010 Hb_003030_040 Hb_003030_040 Hb_005107_020--Hb_003030_040 Hb_011037_020 Hb_011037_020 Hb_001579_260--Hb_011037_020 Hb_001579_260--Hb_005107_020 Hb_029142_020 Hb_029142_020 Hb_001579_260--Hb_029142_020 Hb_001579_260--Hb_012675_080 Hb_000086_190 Hb_000086_190 Hb_001579_260--Hb_000086_190 Hb_000943_020 Hb_000943_020 Hb_001579_260--Hb_000943_020 Hb_022891_010--Hb_130367_010 Hb_002815_050 Hb_002815_050 Hb_022891_010--Hb_002815_050 Hb_022891_010--Hb_000034_090 Hb_007188_030 Hb_007188_030 Hb_022891_010--Hb_007188_030 Hb_000098_300 Hb_000098_300 Hb_022891_010--Hb_000098_300 Hb_022891_010--Hb_003030_040 Hb_006910_050 Hb_006910_050 Hb_130367_010--Hb_006910_050 Hb_130367_010--Hb_002815_050 Hb_130367_010--Hb_007188_030 Hb_130367_010--Hb_003030_040 Hb_002450_130 Hb_002450_130 Hb_008096_020--Hb_002450_130 Hb_008096_020--Hb_002972_060 Hb_008096_020--Hb_000084_130 Hb_003656_150 Hb_003656_150 Hb_008096_020--Hb_003656_150 Hb_006995_010 Hb_006995_010 Hb_008096_020--Hb_006995_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 72.7379 0 72.1838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.75252 9.18506 9.68936 6.24999 8.11068

CAGE analysis