Hb_001090_050

Information

Type -
Description -
Location Contig1090: 57478-62389
Sequence    

Annotation

kegg
ID rcu:RCOM_1032860
description hypothetical protein
nr
ID XP_012078151.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K960
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12033 PE=4 SV=1
Gene Ontology
ID GO:0005515
description mediator of rna polymerase ii transcription subunit 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02739: 57531-61754
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001090_050 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X1 [Jatropha curcas]
2 Hb_001493_180 0.0709723281 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
3 Hb_004846_070 0.0787851163 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Populus euphratica]
4 Hb_000260_570 0.0905984348 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_011242_040 0.0945277038 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
6 Hb_000865_060 0.0951448032 transcription factor TF Family: FAR1 hypothetical protein CISIN_1g043648mg [Citrus sinensis]
7 Hb_005162_070 0.1009710705 - - conserved hypothetical protein [Ricinus communis]
8 Hb_008695_100 0.1013667588 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
9 Hb_001140_220 0.1019694365 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_001817_020 0.1034070207 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
11 Hb_002307_170 0.103598523 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
12 Hb_000258_270 0.105040195 - - PREDICTED: cullin-3A [Jatropha curcas]
13 Hb_000206_240 0.1054206495 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007416_270 0.1058873179 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
15 Hb_010608_050 0.1070850794 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
16 Hb_004052_090 0.1098567832 transcription factor TF Family: C3H PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
17 Hb_000047_030 0.1127227823 - - tfiif-alpha, putative [Ricinus communis]
18 Hb_000723_080 0.1167634134 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
19 Hb_006816_140 0.1170128599 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09820 [Jatropha curcas]
20 Hb_000002_050 0.1172504761 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990 [Jatropha curcas]

Gene co-expression network

sample Hb_001090_050 Hb_001090_050 Hb_001493_180 Hb_001493_180 Hb_001090_050--Hb_001493_180 Hb_004846_070 Hb_004846_070 Hb_001090_050--Hb_004846_070 Hb_000260_570 Hb_000260_570 Hb_001090_050--Hb_000260_570 Hb_011242_040 Hb_011242_040 Hb_001090_050--Hb_011242_040 Hb_000865_060 Hb_000865_060 Hb_001090_050--Hb_000865_060 Hb_005162_070 Hb_005162_070 Hb_001090_050--Hb_005162_070 Hb_001493_180--Hb_000260_570 Hb_001493_180--Hb_005162_070 Hb_001817_020 Hb_001817_020 Hb_001493_180--Hb_001817_020 Hb_001189_050 Hb_001189_050 Hb_001493_180--Hb_001189_050 Hb_011030_020 Hb_011030_020 Hb_001493_180--Hb_011030_020 Hb_000206_240 Hb_000206_240 Hb_004846_070--Hb_000206_240 Hb_013607_040 Hb_013607_040 Hb_004846_070--Hb_013607_040 Hb_000002_050 Hb_000002_050 Hb_004846_070--Hb_000002_050 Hb_002307_170 Hb_002307_170 Hb_004846_070--Hb_002307_170 Hb_008695_100 Hb_008695_100 Hb_004846_070--Hb_008695_100 Hb_000260_570--Hb_005162_070 Hb_002027_040 Hb_002027_040 Hb_000260_570--Hb_002027_040 Hb_010608_050 Hb_010608_050 Hb_000260_570--Hb_010608_050 Hb_000617_150 Hb_000617_150 Hb_000260_570--Hb_000617_150 Hb_000574_390 Hb_000574_390 Hb_011242_040--Hb_000574_390 Hb_001140_220 Hb_001140_220 Hb_011242_040--Hb_001140_220 Hb_015198_020 Hb_015198_020 Hb_011242_040--Hb_015198_020 Hb_000047_030 Hb_000047_030 Hb_011242_040--Hb_000047_030 Hb_001258_040 Hb_001258_040 Hb_011242_040--Hb_001258_040 Hb_000258_270 Hb_000258_270 Hb_011242_040--Hb_000258_270 Hb_007416_270 Hb_007416_270 Hb_000865_060--Hb_007416_270 Hb_001002_030 Hb_001002_030 Hb_000865_060--Hb_001002_030 Hb_005188_090 Hb_005188_090 Hb_000865_060--Hb_005188_090 Hb_000865_060--Hb_011242_040 Hb_168773_010 Hb_168773_010 Hb_000865_060--Hb_168773_010 Hb_005162_070--Hb_002027_040 Hb_005162_070--Hb_008695_100 Hb_005162_070--Hb_011030_020 Hb_005162_070--Hb_001140_220 Hb_005162_070--Hb_013607_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.14375 4.61689 1.06499 4.40922 5.92871 8.44073
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.6425 8.84104 19.8992 4.74043 8.39212

CAGE analysis