Hb_001095_060

Information

Type -
Description -
Location Contig1095: 73950-74324
Sequence    

Annotation

kegg
ID tcc:TCM_012505
description hypothetical protein
nr
ID XP_007036642.1
description Uncharacterized protein TCM_012505 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061FVN7
description Uncharacterized protein OS=Theobroma cacao GN=TCM_012505 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02853: 73976-74504
cDNA
(Sanger)
(ID:Location)		 023_C21.ab1: 73976-74480 , 027_J24.ab1: 73976-74504

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001095_060 0.0 - - Uncharacterized protein TCM_012505 [Theobroma cacao]
2 Hb_121236_010 0.1202899694 - - geranyl-diphosphate synthase [Hevea brasiliensis]
3 Hb_115919_010 0.1205172126 - - unknown [Lotus japonicus]
4 Hb_027445_060 0.1362152085 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
5 Hb_068946_010 0.1451316679 - - hypothetical protein CICLE_v100122621mg, partial [Citrus clementina]
6 Hb_061581_010 0.1717492364 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
7 Hb_001488_110 0.1718408049 - - -
8 Hb_001892_150 0.1747094702 - - -
9 Hb_003507_040 0.1748174628 - - hypothetical protein RCOM_1685970 [Ricinus communis]
10 Hb_135403_010 0.1809469432 - - HEV1.1 [Hevea brasiliensis]
11 Hb_004502_050 0.1814607489 - - hypothetical protein POPTR_1488s00200g [Populus trichocarpa]
12 Hb_004968_060 0.1854402303 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000914_060 0.1995314817 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
14 Hb_003327_060 0.2019142921 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
15 Hb_021888_110 0.2037396832 - - -
16 Hb_134789_010 0.2043142293 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
17 Hb_003813_100 0.2049375344 - - PREDICTED: proteasome subunit beta type-3-A [Cucumis sativus]
18 Hb_008725_200 0.2079147595 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
19 Hb_004025_030 0.2099674478 - - -
20 Hb_002626_020 0.2131315081 - - PREDICTED: methylthioribose-1-phosphate isomerase [Jatropha curcas]

Gene co-expression network

sample Hb_001095_060 Hb_001095_060 Hb_121236_010 Hb_121236_010 Hb_001095_060--Hb_121236_010 Hb_115919_010 Hb_115919_010 Hb_001095_060--Hb_115919_010 Hb_027445_060 Hb_027445_060 Hb_001095_060--Hb_027445_060 Hb_068946_010 Hb_068946_010 Hb_001095_060--Hb_068946_010 Hb_061581_010 Hb_061581_010 Hb_001095_060--Hb_061581_010 Hb_001488_110 Hb_001488_110 Hb_001095_060--Hb_001488_110 Hb_121236_010--Hb_115919_010 Hb_121236_010--Hb_027445_060 Hb_121236_010--Hb_061581_010 Hb_005305_060 Hb_005305_060 Hb_121236_010--Hb_005305_060 Hb_135403_010 Hb_135403_010 Hb_121236_010--Hb_135403_010 Hb_115919_010--Hb_027445_060 Hb_115919_010--Hb_061581_010 Hb_115919_010--Hb_005305_060 Hb_000122_030 Hb_000122_030 Hb_115919_010--Hb_000122_030 Hb_027445_060--Hb_068946_010 Hb_003813_100 Hb_003813_100 Hb_027445_060--Hb_003813_100 Hb_027445_060--Hb_005305_060 Hb_068946_010--Hb_001488_110 Hb_004072_010 Hb_004072_010 Hb_068946_010--Hb_004072_010 Hb_004968_060 Hb_004968_060 Hb_068946_010--Hb_004968_060 Hb_005935_010 Hb_005935_010 Hb_068946_010--Hb_005935_010 Hb_061581_010--Hb_135403_010 Hb_032531_060 Hb_032531_060 Hb_061581_010--Hb_032531_060 Hb_034579_010 Hb_034579_010 Hb_061581_010--Hb_034579_010 Hb_077562_040 Hb_077562_040 Hb_001488_110--Hb_077562_040 Hb_001488_110--Hb_027445_060 Hb_000184_120 Hb_000184_120 Hb_001488_110--Hb_000184_120 Hb_004025_030 Hb_004025_030 Hb_001488_110--Hb_004025_030 Hb_000563_530 Hb_000563_530 Hb_001488_110--Hb_000563_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
97.0901 0.421437 0.0815346 7.09751 30.76 267.33
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
109.315 79.6545 34.261 5.8732 0.915929

CAGE analysis