Hb_001096_010

Information

Type -
Description -
Location Contig1096: 2993-3715
Sequence    

Annotation

kegg
ID rcu:RCOM_1537890
description hypothetical protein
nr
ID XP_012092740.1
description PREDICTED: uncharacterized protein LOC105650448 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067J912
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08879 PE=4 SV=1
Gene Ontology
ID GO:0005886
description trp-like ion channel pkd2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001096_010 0.0 - - PREDICTED: uncharacterized protein LOC105650448 [Jatropha curcas]
2 Hb_002499_030 0.059649033 - - receptor-kinase, putative [Ricinus communis]
3 Hb_011224_070 0.0635086786 - - PREDICTED: solute carrier family 35 member E3 [Jatropha curcas]
4 Hb_005614_020 0.073425949 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
5 Hb_003747_160 0.0738497175 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001511_220 0.0751043988 - - hypothetical protein POPTR_0008s06990g [Populus trichocarpa]
7 Hb_001195_710 0.0782361517 - - glycosyltransferase family GT8 protein [Populus deltoides]
8 Hb_135052_010 0.0793228758 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
9 Hb_003638_020 0.0811580062 - - PREDICTED: uncharacterized protein LOC105645807 [Jatropha curcas]
10 Hb_001269_160 0.0852491482 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003376_060 0.0859511511 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9 isoform X1 [Jatropha curcas]
12 Hb_009476_080 0.0875598224 - - BnaA03g18920D [Brassica napus]
13 Hb_000339_060 0.0879800016 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
14 Hb_004225_120 0.0884393127 - - PREDICTED: uncharacterized protein LOC105628059 [Jatropha curcas]
15 Hb_064047_020 0.0890450437 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
16 Hb_002835_360 0.0903091285 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
17 Hb_070771_010 0.0903328532 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
18 Hb_002171_050 0.0907130689 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Populus euphratica]
19 Hb_000413_030 0.0908616407 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
20 Hb_015807_090 0.0910301463 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]

Gene co-expression network

sample Hb_001096_010 Hb_001096_010 Hb_002499_030 Hb_002499_030 Hb_001096_010--Hb_002499_030 Hb_011224_070 Hb_011224_070 Hb_001096_010--Hb_011224_070 Hb_005614_020 Hb_005614_020 Hb_001096_010--Hb_005614_020 Hb_003747_160 Hb_003747_160 Hb_001096_010--Hb_003747_160 Hb_001511_220 Hb_001511_220 Hb_001096_010--Hb_001511_220 Hb_001195_710 Hb_001195_710 Hb_001096_010--Hb_001195_710 Hb_002499_030--Hb_005614_020 Hb_070771_010 Hb_070771_010 Hb_002499_030--Hb_070771_010 Hb_002499_030--Hb_003747_160 Hb_003638_020 Hb_003638_020 Hb_002499_030--Hb_003638_020 Hb_001269_160 Hb_001269_160 Hb_002499_030--Hb_001269_160 Hb_011224_070--Hb_003747_160 Hb_003376_060 Hb_003376_060 Hb_011224_070--Hb_003376_060 Hb_004225_120 Hb_004225_120 Hb_011224_070--Hb_004225_120 Hb_011224_070--Hb_001511_220 Hb_011224_070--Hb_005614_020 Hb_005614_020--Hb_003747_160 Hb_015807_090 Hb_015807_090 Hb_005614_020--Hb_015807_090 Hb_005614_020--Hb_004225_120 Hb_042083_010 Hb_042083_010 Hb_005614_020--Hb_042083_010 Hb_001051_060 Hb_001051_060 Hb_003747_160--Hb_001051_060 Hb_003747_160--Hb_015807_090 Hb_005686_040 Hb_005686_040 Hb_003747_160--Hb_005686_040 Hb_009476_080 Hb_009476_080 Hb_003747_160--Hb_009476_080 Hb_003747_160--Hb_004225_120 Hb_001511_220--Hb_003747_160 Hb_001511_220--Hb_009476_080 Hb_004650_120 Hb_004650_120 Hb_001511_220--Hb_004650_120 Hb_002835_360 Hb_002835_360 Hb_001511_220--Hb_002835_360 Hb_001511_220--Hb_002499_030 Hb_000368_050 Hb_000368_050 Hb_001195_710--Hb_000368_050 Hb_001195_710--Hb_001511_220 Hb_002171_050 Hb_002171_050 Hb_001195_710--Hb_002171_050 Hb_182869_010 Hb_182869_010 Hb_001195_710--Hb_182869_010 Hb_000449_070 Hb_000449_070 Hb_001195_710--Hb_000449_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.201206 1.80904 2.45992 27.9523 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.077367 0 0 0.494277 12.4389

CAGE analysis