Hb_001096_030

Information

Type -
Description -
Location Contig1096: 65821-67509
Sequence    

Annotation

kegg
ID rcu:RCOM_1329770
description uridylate kinase plant, putative (EC:2.7.4.10)
nr
ID XP_002521756.1
description uridylate kinase plant, putative [Ricinus communis]
swissprot
ID Q6K7H2
description Probable UMP/CMP kinase 4 OS=Oryza sativa subsp. japonica GN=Os02g0778400 PE=2 SV=1
trembl
ID B9S6Y7
description Uridylate kinase plant, putative OS=Ricinus communis GN=RCOM_1329770 PE=3 SV=1
Gene Ontology
ID GO:0005634
description ump-cmp kinase 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02858: 65793-67620
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001096_030 0.0 - - uridylate kinase plant, putative [Ricinus communis]
2 Hb_005663_120 0.0984012121 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
3 Hb_001232_140 0.1100269134 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
4 Hb_005000_180 0.1110190092 - - hypothetical protein JCGZ_07408 [Jatropha curcas]
5 Hb_000163_210 0.1148568671 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
6 Hb_023344_050 0.1197760278 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
7 Hb_005527_040 0.1206738922 - - PREDICTED: methionine adenosyltransferase 2 subunit beta [Jatropha curcas]
8 Hb_062135_020 0.1272708128 - - PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris]
9 Hb_005278_040 0.1280824601 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
10 Hb_012539_020 0.1317090587 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
11 Hb_001314_040 0.1344937202 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
12 Hb_002374_400 0.135249009 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
13 Hb_001377_380 0.1399701482 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
14 Hb_001157_010 0.1401846745 - - deoxyhypusine synthase, putative [Ricinus communis]
15 Hb_001008_090 0.1413975661 - - cytochrome C oxidase, putative [Ricinus communis]
16 Hb_000389_080 0.1436914913 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
17 Hb_007441_260 0.1447372609 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
18 Hb_001005_080 0.1448819638 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
19 Hb_000300_390 0.1456546784 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
20 Hb_006569_100 0.1479480661 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]

Gene co-expression network

sample Hb_001096_030 Hb_001096_030 Hb_005663_120 Hb_005663_120 Hb_001096_030--Hb_005663_120 Hb_001232_140 Hb_001232_140 Hb_001096_030--Hb_001232_140 Hb_005000_180 Hb_005000_180 Hb_001096_030--Hb_005000_180 Hb_000163_210 Hb_000163_210 Hb_001096_030--Hb_000163_210 Hb_023344_050 Hb_023344_050 Hb_001096_030--Hb_023344_050 Hb_005527_040 Hb_005527_040 Hb_001096_030--Hb_005527_040 Hb_000300_390 Hb_000300_390 Hb_005663_120--Hb_000300_390 Hb_012539_020 Hb_012539_020 Hb_005663_120--Hb_012539_020 Hb_002316_120 Hb_002316_120 Hb_005663_120--Hb_002316_120 Hb_032969_030 Hb_032969_030 Hb_005663_120--Hb_032969_030 Hb_005663_120--Hb_005527_040 Hb_000389_080 Hb_000389_080 Hb_005663_120--Hb_000389_080 Hb_001135_210 Hb_001135_210 Hb_001232_140--Hb_001135_210 Hb_001232_140--Hb_005663_120 Hb_001232_140--Hb_032969_030 Hb_000896_120 Hb_000896_120 Hb_001232_140--Hb_000896_120 Hb_000099_130 Hb_000099_130 Hb_001232_140--Hb_000099_130 Hb_001157_010 Hb_001157_010 Hb_001232_140--Hb_001157_010 Hb_062135_020 Hb_062135_020 Hb_005000_180--Hb_062135_020 Hb_005000_180--Hb_000163_210 Hb_000302_290 Hb_000302_290 Hb_005000_180--Hb_000302_290 Hb_120823_010 Hb_120823_010 Hb_005000_180--Hb_120823_010 Hb_005000_180--Hb_000300_390 Hb_000239_030 Hb_000239_030 Hb_005000_180--Hb_000239_030 Hb_000083_090 Hb_000083_090 Hb_000163_210--Hb_000083_090 Hb_000260_200 Hb_000260_200 Hb_000163_210--Hb_000260_200 Hb_000163_210--Hb_012539_020 Hb_000163_210--Hb_000389_080 Hb_000069_140 Hb_000069_140 Hb_000163_210--Hb_000069_140 Hb_000928_130 Hb_000928_130 Hb_023344_050--Hb_000928_130 Hb_002026_120 Hb_002026_120 Hb_023344_050--Hb_002026_120 Hb_025645_030 Hb_025645_030 Hb_023344_050--Hb_025645_030 Hb_005278_040 Hb_005278_040 Hb_023344_050--Hb_005278_040 Hb_001240_020 Hb_001240_020 Hb_023344_050--Hb_001240_020 Hb_000056_250 Hb_000056_250 Hb_023344_050--Hb_000056_250 Hb_001519_030 Hb_001519_030 Hb_005527_040--Hb_001519_030 Hb_006569_100 Hb_006569_100 Hb_005527_040--Hb_006569_100 Hb_001005_080 Hb_001005_080 Hb_005527_040--Hb_001005_080 Hb_004449_200 Hb_004449_200 Hb_005527_040--Hb_004449_200 Hb_000122_020 Hb_000122_020 Hb_005527_040--Hb_000122_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.9088 3.61944 17.8095 41.5858 7.76627 13.7057
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
120.144 157.753 134.472 51.5828 19.3606

CAGE analysis