Hb_001096_090

Information

Type transcription factor
Description TF Family: Whirly
Location Contig1096: 116393-126240
Sequence    

Annotation

kegg
ID pop:POPTR_0003s04700g
description POPTRDRAFT_414440; hypothetical protein
nr
ID XP_012079715.1
description PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
swissprot
ID D9J034
description Single-stranded DNA-bindig protein WHY2, mitochondrial OS=Solanum tuberosum GN=WHY2 PE=1 SV=1
trembl
ID A0A067KIF3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14839 PE=4 SV=1
Gene Ontology
ID GO:0005739
description single-stranded dna-bindig protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02860: 124045-125972 , PASA_asmbl_02861: 116415-126248 , PASA_asmbl_02862: 122957-123326
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001096_090 0.0 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
2 Hb_000085_350 0.0863486416 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
3 Hb_000302_140 0.0899446602 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
4 Hb_002228_070 0.0946852445 - - inosine triphosphate pyrophosphatase, putative [Ricinus communis]
5 Hb_131181_010 0.1102784007 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
6 Hb_001016_150 0.1114643791 - - Rop1 [Hevea brasiliensis]
7 Hb_000538_120 0.1117186937 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
8 Hb_000525_020 0.113869995 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_002811_170 0.1139701915 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
10 Hb_001341_150 0.1142093079 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
11 Hb_000134_320 0.1143664431 - - hypothetical protein PRUPE_ppa013450mg [Prunus persica]
12 Hb_024074_010 0.115415671 - - PREDICTED: cytochrome c [Jatropha curcas]
13 Hb_000731_190 0.1156792468 - - PREDICTED: cardiolipin synthase (CMP-forming), mitochondrial [Jatropha curcas]
14 Hb_000402_160 0.1164193029 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
15 Hb_091433_020 0.1170158548 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
16 Hb_003018_020 0.1173391782 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
17 Hb_000331_470 0.1183803482 - - PREDICTED: uncharacterized protein LOC105136689 [Populus euphratica]
18 Hb_001863_430 0.1212048252 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
19 Hb_001377_450 0.1215671504 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 2 isoform X1 [Jatropha curcas]
20 Hb_000571_020 0.1232550665 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001096_090 Hb_001096_090 Hb_000085_350 Hb_000085_350 Hb_001096_090--Hb_000085_350 Hb_000302_140 Hb_000302_140 Hb_001096_090--Hb_000302_140 Hb_002228_070 Hb_002228_070 Hb_001096_090--Hb_002228_070 Hb_131181_010 Hb_131181_010 Hb_001096_090--Hb_131181_010 Hb_001016_150 Hb_001016_150 Hb_001096_090--Hb_001016_150 Hb_000538_120 Hb_000538_120 Hb_001096_090--Hb_000538_120 Hb_007747_050 Hb_007747_050 Hb_000085_350--Hb_007747_050 Hb_000085_350--Hb_000538_120 Hb_000735_090 Hb_000735_090 Hb_000085_350--Hb_000735_090 Hb_000155_160 Hb_000155_160 Hb_000085_350--Hb_000155_160 Hb_000085_350--Hb_000302_140 Hb_002811_170 Hb_002811_170 Hb_000085_350--Hb_002811_170 Hb_000571_020 Hb_000571_020 Hb_000302_140--Hb_000571_020 Hb_000302_140--Hb_000538_120 Hb_001341_150 Hb_001341_150 Hb_000302_140--Hb_001341_150 Hb_000413_280 Hb_000413_280 Hb_000302_140--Hb_000413_280 Hb_028396_010 Hb_028396_010 Hb_000302_140--Hb_028396_010 Hb_000402_160 Hb_000402_160 Hb_002228_070--Hb_000402_160 Hb_020025_040 Hb_020025_040 Hb_002228_070--Hb_020025_040 Hb_002228_070--Hb_000302_140 Hb_002228_070--Hb_001341_150 Hb_010098_050 Hb_010098_050 Hb_002228_070--Hb_010098_050 Hb_026053_020 Hb_026053_020 Hb_131181_010--Hb_026053_020 Hb_018133_020 Hb_018133_020 Hb_131181_010--Hb_018133_020 Hb_000160_180 Hb_000160_180 Hb_131181_010--Hb_000160_180 Hb_001279_080 Hb_001279_080 Hb_131181_010--Hb_001279_080 Hb_001318_260 Hb_001318_260 Hb_131181_010--Hb_001318_260 Hb_001329_150 Hb_001329_150 Hb_131181_010--Hb_001329_150 Hb_124953_020 Hb_124953_020 Hb_001016_150--Hb_124953_020 Hb_001863_430 Hb_001863_430 Hb_001016_150--Hb_001863_430 Hb_002078_140 Hb_002078_140 Hb_001016_150--Hb_002078_140 Hb_001016_150--Hb_001341_150 Hb_001016_150--Hb_002811_170 Hb_000506_070 Hb_000506_070 Hb_001016_150--Hb_000506_070 Hb_007894_060 Hb_007894_060 Hb_000538_120--Hb_007894_060 Hb_000136_260 Hb_000136_260 Hb_000538_120--Hb_000136_260 Hb_007928_030 Hb_007928_030 Hb_000538_120--Hb_007928_030 Hb_000538_120--Hb_000571_020 Hb_000538_120--Hb_000413_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.72346 7.68905 23.3374 11.7354 5.51531 9.00709
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.6953 36.2735 11.7902 15.3535 6.89489

CAGE analysis