Hb_001096_110

Information

Type -
Description -
Location Contig1096: 139007-140126
Sequence    

Annotation

kegg
ID rcu:RCOM_1329410
description hypothetical protein
nr
ID XP_012079718.1
description PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
swissprot
ID Q84WF5
description Probable VAMP-like protein At1g33475 OS=Arabidopsis thaliana GN=At1g33475 PE=2 SV=1
trembl
ID A0A067K5X0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14846 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable vamp-like protein at1g33475

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02866: 138796-140608
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001096_110 0.0 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
2 Hb_001159_080 0.087257429 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
3 Hb_005569_020 0.1032478135 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003581_260 0.1045633909 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
5 Hb_010407_180 0.1046854359 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
6 Hb_001279_340 0.1084906836 - - glycerol-3-phosphate dehydrogenase [Jatropha curcas]
7 Hb_000108_070 0.1174373681 - - alpha-tubulin 1 [Hevea brasiliensis]
8 Hb_000340_310 0.117882942 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
9 Hb_003994_190 0.1188477995 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002027_040 0.1192661507 - - synapse-associated protein, putative [Ricinus communis]
11 Hb_001545_100 0.1206990618 - - PREDICTED: probable F-actin-capping protein subunit beta [Vitis vinifera]
12 Hb_000125_030 0.1225861171 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
13 Hb_000141_020 0.1251173811 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 6 [Pyrus x bretschneideri]
14 Hb_003642_050 0.1267487227 - - hypothetical protein CISIN_1g048193mg, partial [Citrus sinensis]
15 Hb_000120_960 0.1331023597 - - isocitrate dehydrogenase, putative [Ricinus communis]
16 Hb_000099_130 0.1340517988 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
17 Hb_021409_160 0.1348287892 - - hypothetical protein POPTR_0001s11040g [Populus trichocarpa]
18 Hb_001080_280 0.1353248201 - - PREDICTED: uncharacterized protein LOC105649981 [Jatropha curcas]
19 Hb_001519_030 0.1360119622 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
20 Hb_000260_210 0.1361813738 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001096_110 Hb_001096_110 Hb_001159_080 Hb_001159_080 Hb_001096_110--Hb_001159_080 Hb_005569_020 Hb_005569_020 Hb_001096_110--Hb_005569_020 Hb_003581_260 Hb_003581_260 Hb_001096_110--Hb_003581_260 Hb_010407_180 Hb_010407_180 Hb_001096_110--Hb_010407_180 Hb_001279_340 Hb_001279_340 Hb_001096_110--Hb_001279_340 Hb_000108_070 Hb_000108_070 Hb_001096_110--Hb_000108_070 Hb_001159_080--Hb_003581_260 Hb_000327_220 Hb_000327_220 Hb_001159_080--Hb_000327_220 Hb_000141_020 Hb_000141_020 Hb_001159_080--Hb_000141_020 Hb_000125_030 Hb_000125_030 Hb_001159_080--Hb_000125_030 Hb_000099_130 Hb_000099_130 Hb_001159_080--Hb_000099_130 Hb_005569_020--Hb_000141_020 Hb_005569_020--Hb_010407_180 Hb_000406_120 Hb_000406_120 Hb_005569_020--Hb_000406_120 Hb_005569_020--Hb_001159_080 Hb_005569_020--Hb_000108_070 Hb_002876_120 Hb_002876_120 Hb_003581_260--Hb_002876_120 Hb_007594_120 Hb_007594_120 Hb_003581_260--Hb_007594_120 Hb_000061_300 Hb_000061_300 Hb_003581_260--Hb_000061_300 Hb_002182_030 Hb_002182_030 Hb_003581_260--Hb_002182_030 Hb_001135_210 Hb_001135_210 Hb_003581_260--Hb_001135_210 Hb_000120_960 Hb_000120_960 Hb_010407_180--Hb_000120_960 Hb_010407_180--Hb_001279_340 Hb_010407_180--Hb_000125_030 Hb_000563_250 Hb_000563_250 Hb_010407_180--Hb_000563_250 Hb_005928_100 Hb_005928_100 Hb_010407_180--Hb_005928_100 Hb_003582_040 Hb_003582_040 Hb_010407_180--Hb_003582_040 Hb_006831_120 Hb_006831_120 Hb_001279_340--Hb_006831_120 Hb_002660_070 Hb_002660_070 Hb_001279_340--Hb_002660_070 Hb_001279_340--Hb_000120_960 Hb_002284_200 Hb_002284_200 Hb_001279_340--Hb_002284_200 Hb_001545_100 Hb_001545_100 Hb_001279_340--Hb_001545_100 Hb_001014_040 Hb_001014_040 Hb_000108_070--Hb_001014_040 Hb_008616_070 Hb_008616_070 Hb_000108_070--Hb_008616_070 Hb_000130_050 Hb_000130_050 Hb_000108_070--Hb_000130_050 Hb_000108_070--Hb_002660_070 Hb_001811_030 Hb_001811_030 Hb_000108_070--Hb_001811_030 Hb_000108_070--Hb_000120_960
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0831 5.07511 7.67698 14.1486 5.70724 5.07492
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.5727 24.9594 49.4757 8.47908 8.77246

CAGE analysis