Hb_001097_030

Information

Type -
Description -
Location Contig1097: 11855-12581
Sequence    

Annotation

kegg
ID rcu:RCOM_0905640
description nuclear transport factor, putative
nr
ID XP_002518524.1
description nuclear transport factor, putative [Ricinus communis]
swissprot
ID Q9C7F5
description Nuclear transport factor 2 OS=Arabidopsis thaliana GN=NTF2 PE=1 SV=1
trembl
ID B9RXQ5
description Nuclear transport factor, putative OS=Ricinus communis GN=RCOM_0905640 PE=4 SV=1
Gene Ontology
ID GO:0005622
description nuclear transport factor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02889: 11676-12580
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001097_030 0.0 - - nuclear transport factor, putative [Ricinus communis]
2 Hb_000029_210 0.0656294619 - - protein binding protein, putative [Ricinus communis]
3 Hb_000538_110 0.0679383352 - - sucrose synthase 1 [Hevea brasiliensis]
4 Hb_001163_010 0.0718719919 - - PREDICTED: syncoilin [Jatropha curcas]
5 Hb_001053_120 0.080369305 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46-like [Populus euphratica]
6 Hb_005062_100 0.0828610022 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
7 Hb_008518_060 0.0828743254 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
8 Hb_002170_030 0.0862224822 - - PREDICTED: laccase-4-like [Jatropha curcas]
9 Hb_023342_010 0.0906772279 - - -
10 Hb_000270_340 0.0941735943 - - hypothetical protein JCGZ_11546 [Jatropha curcas]
11 Hb_000023_100 0.0943845165 - - Mechanosensitive channel of small conductance-like 10 [Theobroma cacao]
12 Hb_009158_040 0.096161692 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
13 Hb_008705_080 0.0980601934 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
14 Hb_006351_090 0.0983609178 - - UDP-glycosyltransferase 85A1 [Gossypium arboreum]
15 Hb_010883_160 0.0991203068 - - PREDICTED: pathogenesis-related protein 5 isoform X1 [Jatropha curcas]
16 Hb_151290_010 0.1024873076 - - unnamed protein product [Vitis vinifera]
17 Hb_002119_150 0.1026385785 - - hypothetical protein POPTR_0008s13870g [Populus trichocarpa]
18 Hb_000427_020 0.1050459278 - - PsbA, partial [Dianthus pygmaeus]
19 Hb_000260_520 0.1053148599 - - receptor protein kinase, putative [Ricinus communis]
20 Hb_000563_520 0.108311482 - - multidrug resistance pump, putative [Ricinus communis]

Gene co-expression network

sample Hb_001097_030 Hb_001097_030 Hb_000029_210 Hb_000029_210 Hb_001097_030--Hb_000029_210 Hb_000538_110 Hb_000538_110 Hb_001097_030--Hb_000538_110 Hb_001163_010 Hb_001163_010 Hb_001097_030--Hb_001163_010 Hb_001053_120 Hb_001053_120 Hb_001097_030--Hb_001053_120 Hb_005062_100 Hb_005062_100 Hb_001097_030--Hb_005062_100 Hb_008518_060 Hb_008518_060 Hb_001097_030--Hb_008518_060 Hb_000029_210--Hb_008518_060 Hb_000029_210--Hb_005062_100 Hb_000029_210--Hb_001163_010 Hb_000029_210--Hb_001053_120 Hb_023342_010 Hb_023342_010 Hb_000029_210--Hb_023342_010 Hb_011214_080 Hb_011214_080 Hb_000538_110--Hb_011214_080 Hb_000538_110--Hb_005062_100 Hb_002119_150 Hb_002119_150 Hb_000538_110--Hb_002119_150 Hb_000538_110--Hb_000029_210 Hb_012760_120 Hb_012760_120 Hb_000538_110--Hb_012760_120 Hb_001163_010--Hb_001053_120 Hb_009158_040 Hb_009158_040 Hb_001163_010--Hb_009158_040 Hb_001163_010--Hb_008518_060 Hb_000427_020 Hb_000427_020 Hb_001163_010--Hb_000427_020 Hb_002170_030 Hb_002170_030 Hb_001163_010--Hb_002170_030 Hb_001053_120--Hb_009158_040 Hb_001053_120--Hb_002170_030 Hb_001053_120--Hb_023342_010 Hb_026198_080 Hb_026198_080 Hb_001053_120--Hb_026198_080 Hb_005062_100--Hb_008518_060 Hb_000023_100 Hb_000023_100 Hb_005062_100--Hb_000023_100 Hb_011362_010 Hb_011362_010 Hb_005062_100--Hb_011362_010 Hb_000260_520 Hb_000260_520 Hb_005062_100--Hb_000260_520 Hb_000739_280 Hb_000739_280 Hb_005062_100--Hb_000739_280 Hb_008518_060--Hb_001053_120 Hb_001397_020 Hb_001397_020 Hb_008518_060--Hb_001397_020 Hb_008518_060--Hb_002170_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0989191 0.296638 2.09478 11.4187 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.115259 0 0 0.29884 19.336

CAGE analysis