Hb_001097_040

Information

Type -
Description -
Location Contig1097: 15501-16547
Sequence    

Annotation

kegg
ID rcu:RCOM_0905660
description Tumor suppressor candidate, putative
nr
ID XP_012091400.1
description PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
swissprot
ID Q9SYB5
description Probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B OS=Arabidopsis thaliana GN=OST3B PE=2 SV=1
trembl
ID A0A067JDH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21259 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001097_040 0.0 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
2 Hb_001085_080 0.0599531064 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
3 Hb_003038_040 0.0707941911 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
4 Hb_007137_050 0.0745813097 - - Uncharacterized protein isoform 1 [Theobroma cacao]
5 Hb_000023_300 0.0769464824 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
6 Hb_001159_030 0.0783661316 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
7 Hb_000152_700 0.0790345135 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
8 Hb_001021_010 0.0790538886 - - PREDICTED: bifunctional protein FolD 2 [Jatropha curcas]
9 Hb_009615_160 0.0793537286 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
10 Hb_000085_450 0.0803953014 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
11 Hb_019280_010 0.0808718281 - - PREDICTED: F-box protein At5g39450 isoform X2 [Jatropha curcas]
12 Hb_000701_030 0.0814014479 - - Sodium/hydrogen exchanger 6 -like protein [Gossypium arboreum]
13 Hb_008289_040 0.0817165754 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
14 Hb_000579_130 0.082542969 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_006683_020 0.0828634893 - - PREDICTED: nucleosome assembly protein 1;4 [Jatropha curcas]
16 Hb_000085_260 0.0835407597 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
17 Hb_000679_100 0.0838777 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
18 Hb_001811_170 0.0841849101 - - dynamin, putative [Ricinus communis]
19 Hb_010042_030 0.085095079 - - PREDICTED: UDP-N-acetylglucosamine diphosphorylase 1 [Jatropha curcas]
20 Hb_003994_220 0.0871992794 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]

Gene co-expression network

sample Hb_001097_040 Hb_001097_040 Hb_001085_080 Hb_001085_080 Hb_001097_040--Hb_001085_080 Hb_003038_040 Hb_003038_040 Hb_001097_040--Hb_003038_040 Hb_007137_050 Hb_007137_050 Hb_001097_040--Hb_007137_050 Hb_000023_300 Hb_000023_300 Hb_001097_040--Hb_000023_300 Hb_001159_030 Hb_001159_030 Hb_001097_040--Hb_001159_030 Hb_000152_700 Hb_000152_700 Hb_001097_040--Hb_000152_700 Hb_000579_130 Hb_000579_130 Hb_001085_080--Hb_000579_130 Hb_001558_040 Hb_001558_040 Hb_001085_080--Hb_001558_040 Hb_158845_060 Hb_158845_060 Hb_001085_080--Hb_158845_060 Hb_002739_120 Hb_002739_120 Hb_001085_080--Hb_002739_120 Hb_001811_170 Hb_001811_170 Hb_001085_080--Hb_001811_170 Hb_003994_220 Hb_003994_220 Hb_003038_040--Hb_003994_220 Hb_000161_210 Hb_000161_210 Hb_003038_040--Hb_000161_210 Hb_065500_020 Hb_065500_020 Hb_003038_040--Hb_065500_020 Hb_003038_040--Hb_001159_030 Hb_010042_030 Hb_010042_030 Hb_003038_040--Hb_010042_030 Hb_188063_050 Hb_188063_050 Hb_007137_050--Hb_188063_050 Hb_000085_450 Hb_000085_450 Hb_007137_050--Hb_000085_450 Hb_007137_050--Hb_010042_030 Hb_002740_090 Hb_002740_090 Hb_007137_050--Hb_002740_090 Hb_007137_050--Hb_000579_130 Hb_012262_030 Hb_012262_030 Hb_000023_300--Hb_012262_030 Hb_000227_160 Hb_000227_160 Hb_000023_300--Hb_000227_160 Hb_001051_070 Hb_001051_070 Hb_000023_300--Hb_001051_070 Hb_010672_020 Hb_010672_020 Hb_000023_300--Hb_010672_020 Hb_008748_030 Hb_008748_030 Hb_000023_300--Hb_008748_030 Hb_000085_260 Hb_000085_260 Hb_001159_030--Hb_000085_260 Hb_001159_030--Hb_010042_030 Hb_005062_110 Hb_005062_110 Hb_001159_030--Hb_005062_110 Hb_002007_260 Hb_002007_260 Hb_001159_030--Hb_002007_260 Hb_004450_070 Hb_004450_070 Hb_000152_700--Hb_004450_070 Hb_000649_060 Hb_000649_060 Hb_000152_700--Hb_000649_060 Hb_000342_050 Hb_000342_050 Hb_000152_700--Hb_000342_050 Hb_001226_130 Hb_001226_130 Hb_000152_700--Hb_001226_130 Hb_020805_180 Hb_020805_180 Hb_000152_700--Hb_020805_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.54176 23.3707 19.7949 44.089 13.2265 11.985
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.47901 9.5265 12.512 28.8607 20.1695

CAGE analysis