Hb_001097_060

Information

Type -
Description -
Location Contig1097: 21567-22836
Sequence    

Annotation

kegg
ID rcu:RCOM_0905690
description Xyloglucan endotransglucosylase/hydrolase protein A precursor, putative (EC:2.4.1.207)
nr
ID XP_012091402.1
description PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 8 [Jatropha curcas]
swissprot
ID Q8L9A9
description Probable xyloglucan endotransglucosylase/hydrolase protein 8 OS=Arabidopsis thaliana GN=XTH8 PE=2 SV=2
trembl
ID A0A067JMR2
description Xyloglucan endotransglucosylase/hydrolase OS=Jatropha curcas GN=JCGZ_21260 PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable xyloglucan endotransglucosylase hydrolase protein 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02894: 21594-21764 , PASA_asmbl_02895: 21775-22843
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001097_060 0.0 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 8 [Jatropha curcas]
2 Hb_162378_010 0.1642371936 - - hypothetical protein JCGZ_20480 [Jatropha curcas]
3 Hb_000556_150 0.1887075953 - - PREDICTED: fasciclin-like arabinogalactan protein 10 [Populus euphratica]
4 Hb_105427_010 0.1953717593 - - -
5 Hb_114638_010 0.1967129387 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Jatropha curcas]
6 Hb_007919_080 0.2044764816 - - PREDICTED: uncharacterized protein At1g76660 isoform X1 [Jatropha curcas]
7 Hb_003371_060 0.2045848075 - - PREDICTED: cyclic pyranopterin monophosphate synthase, mitochondrial isoform X3 [Populus euphratica]
8 Hb_050686_010 0.2125371256 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002235_130 0.2149179501 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002217_380 0.2152991645 - - PREDICTED: uncharacterized protein LOC105643567 [Jatropha curcas]
11 Hb_000544_180 0.2172256368 - - PREDICTED: probable auxin efflux carrier component 1c isoform X1 [Jatropha curcas]
12 Hb_000853_260 0.2253639633 - - PREDICTED: probable galacturonosyltransferase-like 7 [Jatropha curcas]
13 Hb_086022_010 0.2280755501 - - PREDICTED: succinate dehydrogenase assembly factor 1 homolog, mitochondrial [Nicotiana tomentosiformis]
14 Hb_000096_080 0.2286034612 - - PREDICTED: putative glycosyltransferase 7 [Jatropha curcas]
15 Hb_003858_040 0.2297510555 - - hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
16 Hb_003177_010 0.2311369521 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
17 Hb_008511_060 0.2365882818 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
18 Hb_002447_020 0.2384464088 - - conserved hypothetical protein [Ricinus communis]
19 Hb_009485_020 0.2422045202 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
20 Hb_002900_080 0.2442480275 - - PREDICTED: E3 ubiquitin-protein ligase MARCH8-like [Jatropha curcas]

Gene co-expression network

sample Hb_001097_060 Hb_001097_060 Hb_162378_010 Hb_162378_010 Hb_001097_060--Hb_162378_010 Hb_000556_150 Hb_000556_150 Hb_001097_060--Hb_000556_150 Hb_105427_010 Hb_105427_010 Hb_001097_060--Hb_105427_010 Hb_114638_010 Hb_114638_010 Hb_001097_060--Hb_114638_010 Hb_007919_080 Hb_007919_080 Hb_001097_060--Hb_007919_080 Hb_003371_060 Hb_003371_060 Hb_001097_060--Hb_003371_060 Hb_003858_040 Hb_003858_040 Hb_162378_010--Hb_003858_040 Hb_000002_490 Hb_000002_490 Hb_162378_010--Hb_000002_490 Hb_001050_010 Hb_001050_010 Hb_162378_010--Hb_001050_010 Hb_162378_010--Hb_000556_150 Hb_000480_010 Hb_000480_010 Hb_162378_010--Hb_000480_010 Hb_000392_370 Hb_000392_370 Hb_162378_010--Hb_000392_370 Hb_000556_150--Hb_000392_370 Hb_005463_130 Hb_005463_130 Hb_000556_150--Hb_005463_130 Hb_086022_010 Hb_086022_010 Hb_000556_150--Hb_086022_010 Hb_000556_150--Hb_007919_080 Hb_001501_080 Hb_001501_080 Hb_000556_150--Hb_001501_080 Hb_007904_210 Hb_007904_210 Hb_000556_150--Hb_007904_210 Hb_007547_040 Hb_007547_040 Hb_105427_010--Hb_007547_040 Hb_050686_010 Hb_050686_010 Hb_105427_010--Hb_050686_010 Hb_002267_090 Hb_002267_090 Hb_105427_010--Hb_002267_090 Hb_005928_080 Hb_005928_080 Hb_105427_010--Hb_005928_080 Hb_001916_130 Hb_001916_130 Hb_105427_010--Hb_001916_130 Hb_001021_160 Hb_001021_160 Hb_114638_010--Hb_001021_160 Hb_002447_020 Hb_002447_020 Hb_114638_010--Hb_002447_020 Hb_000853_260 Hb_000853_260 Hb_114638_010--Hb_000853_260 Hb_114638_010--Hb_162378_010 Hb_009189_020 Hb_009189_020 Hb_114638_010--Hb_009189_020 Hb_000416_050 Hb_000416_050 Hb_007919_080--Hb_000416_050 Hb_001486_170 Hb_001486_170 Hb_007919_080--Hb_001486_170 Hb_002836_140 Hb_002836_140 Hb_007919_080--Hb_002836_140 Hb_000022_200 Hb_000022_200 Hb_007919_080--Hb_000022_200 Hb_002900_080 Hb_002900_080 Hb_007919_080--Hb_002900_080 Hb_010968_010 Hb_010968_010 Hb_003371_060--Hb_010968_010 Hb_003371_060--Hb_000556_150 Hb_007594_030 Hb_007594_030 Hb_003371_060--Hb_007594_030 Hb_002026_140 Hb_002026_140 Hb_003371_060--Hb_002026_140 Hb_003371_060--Hb_162378_010 Hb_005656_210 Hb_005656_210 Hb_003371_060--Hb_005656_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.73783 0.357269 3.54073 5.5064 6.25757 1.68098
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.846526 0.80834 1.64608 0.940508 0.288609

CAGE analysis