Hb_001097_110

Information

Type -
Description -
Location Contig1097: 103902-107656
Sequence    

Annotation

kegg
ID rcu:RCOM_0905790
description gibberellin 20-oxidase, putative (EC:1.14.11.15)
nr
ID XP_002518538.1
description gibberellin 20-oxidase, putative [Ricinus communis]
swissprot
ID O49561
description Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX8 PE=1 SV=2
trembl
ID B9RXR9
description Gibberellin 20-oxidase, putative OS=Ricinus communis GN=RCOM_0905790 PE=3 SV=1
Gene Ontology
ID GO:0016707
description gibberellin 2-beta-dioxygenase 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02903: 105311-107232 , PASA_asmbl_02904: 107243-107639
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001097_110 0.0 - - gibberellin 20-oxidase, putative [Ricinus communis]
2 Hb_001140_110 0.0409018621 - - hypothetical protein JCGZ_26123 [Jatropha curcas]
3 Hb_001951_050 0.0434659686 - - chlorophyll A/B binding protein, putative [Ricinus communis]
4 Hb_000140_040 0.0451914622 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
5 Hb_003805_110 0.0453257619 - - PREDICTED: laccase-11-like [Jatropha curcas]
6 Hb_007534_080 0.0501340981 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
7 Hb_003058_150 0.0515139747 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
8 Hb_077976_010 0.0534033167 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
9 Hb_004143_080 0.0542003477 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]
10 Hb_005474_070 0.0547849759 - - hypothetical protein JCGZ_10579 [Jatropha curcas]
11 Hb_042123_010 0.0569958905 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Populus euphratica]
12 Hb_004818_010 0.058784487 - - hypothetical protein JCGZ_13628 [Jatropha curcas]
13 Hb_029584_020 0.0589046429 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000815_120 0.0590720427 - - calcium ion binding protein, putative [Ricinus communis]
15 Hb_003647_070 0.0611433035 - - hypothetical protein POPTR_0006s09430g [Populus trichocarpa]
16 Hb_003093_050 0.0674559912 - - PREDICTED: uncharacterized protein LOC105641023 isoform X2 [Jatropha curcas]
17 Hb_001080_290 0.0675331702 - - PSI reaction center subunit II [Citrus sinensis]
18 Hb_000530_060 0.0690270393 - - -
19 Hb_000152_300 0.0693795206 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
20 Hb_081344_010 0.0707713298 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]

Gene co-expression network

sample Hb_001097_110 Hb_001097_110 Hb_001140_110 Hb_001140_110 Hb_001097_110--Hb_001140_110 Hb_001951_050 Hb_001951_050 Hb_001097_110--Hb_001951_050 Hb_000140_040 Hb_000140_040 Hb_001097_110--Hb_000140_040 Hb_003805_110 Hb_003805_110 Hb_001097_110--Hb_003805_110 Hb_007534_080 Hb_007534_080 Hb_001097_110--Hb_007534_080 Hb_003058_150 Hb_003058_150 Hb_001097_110--Hb_003058_150 Hb_001140_110--Hb_001951_050 Hb_001140_110--Hb_003058_150 Hb_001140_110--Hb_003805_110 Hb_001080_290 Hb_001080_290 Hb_001140_110--Hb_001080_290 Hb_000940_120 Hb_000940_120 Hb_001140_110--Hb_000940_120 Hb_001951_050--Hb_001080_290 Hb_004143_080 Hb_004143_080 Hb_001951_050--Hb_004143_080 Hb_000815_120 Hb_000815_120 Hb_001951_050--Hb_000815_120 Hb_042123_010 Hb_042123_010 Hb_001951_050--Hb_042123_010 Hb_180094_010 Hb_180094_010 Hb_000140_040--Hb_180094_010 Hb_127349_020 Hb_127349_020 Hb_000140_040--Hb_127349_020 Hb_000152_300 Hb_000152_300 Hb_000140_040--Hb_000152_300 Hb_046825_010 Hb_046825_010 Hb_000140_040--Hb_046825_010 Hb_000140_040--Hb_007534_080 Hb_029584_020 Hb_029584_020 Hb_003805_110--Hb_029584_020 Hb_000530_060 Hb_000530_060 Hb_003805_110--Hb_000530_060 Hb_003805_110--Hb_003058_150 Hb_081344_010 Hb_081344_010 Hb_003805_110--Hb_081344_010 Hb_005474_070 Hb_005474_070 Hb_007534_080--Hb_005474_070 Hb_003647_070 Hb_003647_070 Hb_007534_080--Hb_003647_070 Hb_007534_080--Hb_003058_150 Hb_007534_080--Hb_003805_110 Hb_003058_150--Hb_005474_070 Hb_003058_150--Hb_000940_120 Hb_003058_150--Hb_003647_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.206142 9.21795 15.5708 0 0.0179507
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.078632 0 0 0 69.2899

CAGE analysis