Hb_001097_170

Information

Type -
Description -
Location Contig1097: 191891-192601
Sequence    

Annotation

kegg
ID cic:CICLE_v10017613mg
description hypothetical protein
nr
ID XP_012091418.1
description PREDICTED: protein NDR1 [Jatropha curcas]
swissprot
ID O48915
description Protein NDR1 OS=Arabidopsis thaliana GN=NDR1 PE=1 SV=1
trembl
ID A0A067JAH1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21277 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001097_170 0.0 - - PREDICTED: protein NDR1 [Jatropha curcas]
2 Hb_009158_040 0.0660000372 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
3 Hb_094439_040 0.0688916007 - - PREDICTED: cytochrome P450 93A1-like [Citrus sinensis]
4 Hb_001289_040 0.070835449 - - NDR1/HIN1-like 1 [Theobroma cacao]
5 Hb_001053_120 0.0714994401 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46-like [Populus euphratica]
6 Hb_000023_100 0.0763378519 - - Mechanosensitive channel of small conductance-like 10 [Theobroma cacao]
7 Hb_000172_270 0.0764453926 - - hypothetical protein JCGZ_24087 [Jatropha curcas]
8 Hb_000580_200 0.0770004008 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
9 Hb_003549_100 0.0773207813 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
10 Hb_001163_010 0.0797045104 - - PREDICTED: syncoilin [Jatropha curcas]
11 Hb_003025_170 0.0798342176 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
12 Hb_151290_010 0.0829405989 - - unnamed protein product [Vitis vinifera]
13 Hb_023342_010 0.0832148076 - - -
14 Hb_077027_010 0.0849866111 - - hypothetical protein JCGZ_04511 [Jatropha curcas]
15 Hb_026198_080 0.0870707118 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Populus euphratica]
16 Hb_000427_020 0.0880416869 - - PsbA, partial [Dianthus pygmaeus]
17 Hb_104014_020 0.088573522 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
18 Hb_064396_020 0.0898091638 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
19 Hb_000416_020 0.0939213427 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006895_010 0.0955049272 - - PREDICTED: secologanin synthase-like [Citrus sinensis]

Gene co-expression network

sample Hb_001097_170 Hb_001097_170 Hb_009158_040 Hb_009158_040 Hb_001097_170--Hb_009158_040 Hb_094439_040 Hb_094439_040 Hb_001097_170--Hb_094439_040 Hb_001289_040 Hb_001289_040 Hb_001097_170--Hb_001289_040 Hb_001053_120 Hb_001053_120 Hb_001097_170--Hb_001053_120 Hb_000023_100 Hb_000023_100 Hb_001097_170--Hb_000023_100 Hb_000172_270 Hb_000172_270 Hb_001097_170--Hb_000172_270 Hb_009158_040--Hb_001053_120 Hb_002170_030 Hb_002170_030 Hb_009158_040--Hb_002170_030 Hb_026198_080 Hb_026198_080 Hb_009158_040--Hb_026198_080 Hb_023342_010 Hb_023342_010 Hb_009158_040--Hb_023342_010 Hb_006351_090 Hb_006351_090 Hb_009158_040--Hb_006351_090 Hb_001163_010 Hb_001163_010 Hb_009158_040--Hb_001163_010 Hb_094439_040--Hb_001289_040 Hb_000557_080 Hb_000557_080 Hb_094439_040--Hb_000557_080 Hb_077027_010 Hb_077027_010 Hb_094439_040--Hb_077027_010 Hb_064396_020 Hb_064396_020 Hb_094439_040--Hb_064396_020 Hb_006895_010 Hb_006895_010 Hb_094439_040--Hb_006895_010 Hb_001289_040--Hb_000557_080 Hb_001289_040--Hb_077027_010 Hb_001289_040--Hb_006895_010 Hb_001289_040--Hb_064396_020 Hb_000421_040 Hb_000421_040 Hb_001289_040--Hb_000421_040 Hb_001053_120--Hb_001163_010 Hb_001053_120--Hb_002170_030 Hb_001053_120--Hb_023342_010 Hb_000029_210 Hb_000029_210 Hb_001053_120--Hb_000029_210 Hb_001053_120--Hb_026198_080 Hb_000023_100--Hb_023342_010 Hb_003786_030 Hb_003786_030 Hb_000023_100--Hb_003786_030 Hb_000023_100--Hb_001053_120 Hb_002973_060 Hb_002973_060 Hb_000023_100--Hb_002973_060 Hb_000023_100--Hb_009158_040 Hb_135887_010 Hb_135887_010 Hb_000023_100--Hb_135887_010 Hb_138977_010 Hb_138977_010 Hb_000172_270--Hb_138977_010 Hb_000172_270--Hb_000421_040 Hb_061700_010 Hb_061700_010 Hb_000172_270--Hb_061700_010 Hb_010172_040 Hb_010172_040 Hb_000172_270--Hb_010172_040 Hb_000172_270--Hb_001289_040 Hb_002809_180 Hb_002809_180 Hb_000172_270--Hb_002809_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0577446 1.27618 6.7798 0.0344721 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 7.6469

CAGE analysis