Hb_001098_020

Information

Type -
Description -
Location Contig1098: 59019-61165
Sequence    

Annotation

kegg
ID pop:POPTR_0011s13320g
description POPTRDRAFT_569039; ethylene-responsive family protein
nr
ID XP_011012087.1
description PREDICTED: transcription factor bHLH123-like isoform X1 [Populus euphratica]
swissprot
ID Q8GXT3
description Transcription factor bHLH123 OS=Arabidopsis thaliana GN=BHLH123 PE=2 SV=1
trembl
ID B9I057
description Ethylene-responsive family protein OS=Populus trichocarpa GN=POPTR_0011s13320g PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh123-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001098_020 0.0 - - PREDICTED: transcription factor bHLH123-like isoform X1 [Populus euphratica]
2 Hb_003071_040 0.0673500839 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
3 Hb_004242_160 0.0884254462 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
4 Hb_000313_190 0.1083022867 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
5 Hb_000529_050 0.1088697592 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
6 Hb_073973_180 0.1136992985 - - PREDICTED: WAT1-related protein At4g08290 isoform X1 [Populus euphratica]
7 Hb_094839_010 0.1228253755 - - conserved hypothetical protein [Ricinus communis]
8 Hb_160576_010 0.1288550952 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
9 Hb_000417_230 0.1314228173 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010417_120 0.1324129876 - - conserved hypothetical protein [Ricinus communis]
11 Hb_098175_010 0.1324639644 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
12 Hb_000221_280 0.1338652233 - - PREDICTED: protein EXORDIUM-like [Populus euphratica]
13 Hb_161045_010 0.1339581134 - - hypothetical protein JCGZ_15100 [Jatropha curcas]
14 Hb_001477_080 0.1347430243 - - hypothetical protein POPTR_0017s04860g [Populus trichocarpa]
15 Hb_001956_160 0.1375207186 - - hypothetical protein L484_009438 [Morus notabilis]
16 Hb_010573_030 0.137744438 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000322_020 0.1379836116 - - PREDICTED: uncharacterized protein LOC105637914 [Jatropha curcas]
18 Hb_013591_010 0.1385789266 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
19 Hb_005714_140 0.1388085894 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
20 Hb_172240_010 0.138962427 - - PREDICTED: uncharacterized protein LOC105795660 [Gossypium raimondii]

Gene co-expression network

sample Hb_001098_020 Hb_001098_020 Hb_003071_040 Hb_003071_040 Hb_001098_020--Hb_003071_040 Hb_004242_160 Hb_004242_160 Hb_001098_020--Hb_004242_160 Hb_000313_190 Hb_000313_190 Hb_001098_020--Hb_000313_190 Hb_000529_050 Hb_000529_050 Hb_001098_020--Hb_000529_050 Hb_073973_180 Hb_073973_180 Hb_001098_020--Hb_073973_180 Hb_094839_010 Hb_094839_010 Hb_001098_020--Hb_094839_010 Hb_098175_010 Hb_098175_010 Hb_003071_040--Hb_098175_010 Hb_003071_040--Hb_000313_190 Hb_000731_020 Hb_000731_020 Hb_003071_040--Hb_000731_020 Hb_010573_030 Hb_010573_030 Hb_003071_040--Hb_010573_030 Hb_003071_040--Hb_000529_050 Hb_010417_120 Hb_010417_120 Hb_004242_160--Hb_010417_120 Hb_001477_080 Hb_001477_080 Hb_004242_160--Hb_001477_080 Hb_001511_270 Hb_001511_270 Hb_004242_160--Hb_001511_270 Hb_004242_160--Hb_000529_050 Hb_004242_160--Hb_000313_190 Hb_000313_190--Hb_000529_050 Hb_000313_190--Hb_001477_080 Hb_000221_280 Hb_000221_280 Hb_000313_190--Hb_000221_280 Hb_000313_190--Hb_000731_020 Hb_000529_050--Hb_001477_080 Hb_000529_050--Hb_000221_280 Hb_004586_120 Hb_004586_120 Hb_000529_050--Hb_004586_120 Hb_000322_020 Hb_000322_020 Hb_000529_050--Hb_000322_020 Hb_032260_100 Hb_032260_100 Hb_000529_050--Hb_032260_100 Hb_073973_180--Hb_094839_010 Hb_000417_230 Hb_000417_230 Hb_073973_180--Hb_000417_230 Hb_002107_080 Hb_002107_080 Hb_073973_180--Hb_002107_080 Hb_161045_010 Hb_161045_010 Hb_073973_180--Hb_161045_010 Hb_073973_180--Hb_010573_030 Hb_094839_010--Hb_000417_230 Hb_094839_010--Hb_010573_030 Hb_000134_010 Hb_000134_010 Hb_094839_010--Hb_000134_010 Hb_094839_010--Hb_002107_080 Hb_007728_010 Hb_007728_010 Hb_094839_010--Hb_007728_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.17349 0.584551 1.20799 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.191587

CAGE analysis