Hb_001098_030

Information

Type -
Description -
Location Contig1098: 67629-71548
Sequence    

Annotation

kegg
ID pop:POPTR_0001s43940g
description FLAVODOXIN-LIKE QUINONE REDUCTASE 1 family protein
nr
ID XP_011012089.1
description PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Populus euphratica]
swissprot
ID Q6NQE2
description Probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 OS=Arabidopsis thaliana GN=At4g27270 PE=2 SV=1
trembl
ID U5GWE6
description FLAVODOXIN-LIKE QUINONE REDUCTASE 1 family protein OS=Populus trichocarpa GN=POPTR_0001s43940g PE=3 SV=1
Gene Ontology
ID GO:0010181
description minor allergen alt a 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02912: 67736-71504
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001098_030 0.0 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Populus euphratica]
2 Hb_004648_110 0.1541536217 - - ATP binding protein, putative [Ricinus communis]
3 Hb_006836_030 0.1833730108 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
4 Hb_001975_040 0.1973037063 rubber biosynthesis Gene Name: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Hevea brasiliensis]
5 Hb_003181_060 0.206859848 - - PREDICTED: triosephosphate isomerase, cytosolic [Jatropha curcas]
6 Hb_002603_110 0.2087192679 - - PREDICTED: uncharacterized protein LOC105646325 [Jatropha curcas]
7 Hb_012239_050 0.2132719481 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000317_420 0.21374886 - - PREDICTED: extradiol ring-cleavage dioxygenase [Jatropha curcas]
9 Hb_004024_020 0.215509139 - - ankyrin repeat-containing protein, putative [Ricinus communis]
10 Hb_003680_140 0.2195299236 - - PREDICTED: uncharacterized protein LOC105121770 [Populus euphratica]
11 Hb_001975_030 0.220614042 - - 4-diphosphocytidyl-2-c-methyl-d-erythritol kinase, partial [Plectranthus barbatus]
12 Hb_001269_470 0.2239342722 - - PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
13 Hb_000012_110 0.2290346787 - - hypothetical protein CICLE_v10008613mg [Citrus clementina]
14 Hb_001269_070 0.229099466 - - double-stranded RNA binding protein, putative [Ricinus communis]
15 Hb_012851_020 0.2345946519 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_027298_010 0.2353363583 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000008_060 0.2362028011 - - protein binding protein, putative [Ricinus communis]
18 Hb_001307_110 0.2370969873 - - PREDICTED: uncharacterized protein LOC105644507 [Jatropha curcas]
19 Hb_027298_030 0.2383606918 - - PREDICTED: histone H1-like [Jatropha curcas]
20 Hb_000879_230 0.2409543985 - - PREDICTED: tetratricopeptide repeat protein 7A [Jatropha curcas]

Gene co-expression network

sample Hb_001098_030 Hb_001098_030 Hb_004648_110 Hb_004648_110 Hb_001098_030--Hb_004648_110 Hb_006836_030 Hb_006836_030 Hb_001098_030--Hb_006836_030 Hb_001975_040 Hb_001975_040 Hb_001098_030--Hb_001975_040 Hb_003181_060 Hb_003181_060 Hb_001098_030--Hb_003181_060 Hb_002603_110 Hb_002603_110 Hb_001098_030--Hb_002603_110 Hb_012239_050 Hb_012239_050 Hb_001098_030--Hb_012239_050 Hb_004648_110--Hb_012239_050 Hb_003911_030 Hb_003911_030 Hb_004648_110--Hb_003911_030 Hb_000271_080 Hb_000271_080 Hb_004648_110--Hb_000271_080 Hb_004648_110--Hb_002603_110 Hb_007254_030 Hb_007254_030 Hb_004648_110--Hb_007254_030 Hb_000317_420 Hb_000317_420 Hb_006836_030--Hb_000317_420 Hb_027298_030 Hb_027298_030 Hb_006836_030--Hb_027298_030 Hb_000012_110 Hb_000012_110 Hb_006836_030--Hb_000012_110 Hb_006836_030--Hb_001975_040 Hb_001975_030 Hb_001975_030 Hb_006836_030--Hb_001975_030 Hb_004007_110 Hb_004007_110 Hb_006836_030--Hb_004007_110 Hb_001975_040--Hb_000317_420 Hb_001975_040--Hb_001975_030 Hb_002835_340 Hb_002835_340 Hb_001975_040--Hb_002835_340 Hb_001975_040--Hb_000012_110 Hb_002660_120 Hb_002660_120 Hb_001975_040--Hb_002660_120 Hb_001269_470 Hb_001269_470 Hb_003181_060--Hb_001269_470 Hb_003181_060--Hb_027298_030 Hb_021079_010 Hb_021079_010 Hb_003181_060--Hb_021079_010 Hb_027298_010 Hb_027298_010 Hb_003181_060--Hb_027298_010 Hb_001711_120 Hb_001711_120 Hb_003181_060--Hb_001711_120 Hb_000392_550 Hb_000392_550 Hb_003181_060--Hb_000392_550 Hb_002603_110--Hb_001975_030 Hb_000483_100 Hb_000483_100 Hb_002603_110--Hb_000483_100 Hb_000008_060 Hb_000008_060 Hb_002603_110--Hb_000008_060 Hb_000086_390 Hb_000086_390 Hb_002603_110--Hb_000086_390 Hb_003226_200 Hb_003226_200 Hb_002603_110--Hb_003226_200 Hb_032568_010 Hb_032568_010 Hb_002603_110--Hb_032568_010 Hb_010691_010 Hb_010691_010 Hb_012239_050--Hb_010691_010 Hb_012132_020 Hb_012132_020 Hb_012239_050--Hb_012132_020 Hb_000679_030 Hb_000679_030 Hb_012239_050--Hb_000679_030 Hb_012239_050--Hb_002603_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.03476 12.3571 19.4554 64.6935 0.543289 0.622687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.83986 77.1534 12.619 24.2734 72.1895

CAGE analysis