Hb_001098_050

Information

Type -
Description -
Location Contig1098: 106004-128300
Sequence    

Annotation

kegg
ID vvi:100246941
description uncharacterized LOC100246941
nr
ID XP_010644281.1
description PREDICTED: uncharacterized protein LOC100246941 [Vitis vinifera]
swissprot
ID O81905
description Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana GN=SD18 PE=1 SV=1
trembl
ID K7LCV4
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase at4g27290

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02913: 106551-107099 , PASA_asmbl_02914: 107115-107496 , PASA_asmbl_02916: 108320-109052 , PASA_asmbl_02917: 117108-117485 , PASA_asmbl_02918: 123229-123675 , PASA_asmbl_02919: 126241-126743
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001098_050 0.0 - - PREDICTED: uncharacterized protein LOC100246941 [Vitis vinifera]
2 Hb_002908_040 0.1179303234 - - DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative [Ricinus communis]
3 Hb_004724_410 0.1248158642 - - PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]
4 Hb_000197_220 0.1297453206 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
5 Hb_001223_010 0.1298457559 - - PREDICTED: FGGY carbohydrate kinase domain-containing protein isoform X2 [Jatropha curcas]
6 Hb_000215_160 0.1301166779 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
7 Hb_000950_060 0.1349331475 - - PREDICTED: CCAAT/enhancer-binding protein zeta [Jatropha curcas]
8 Hb_000189_320 0.1358700838 - - PREDICTED: multisubstrate pseudouridine synthase 7 isoform X2 [Jatropha curcas]
9 Hb_000022_150 0.1361030642 - - -
10 Hb_114151_020 0.1370519533 - - glucan water dikinase 2 [Manihot esculenta]
11 Hb_001269_650 0.1416333814 - - transporter, putative [Ricinus communis]
12 Hb_000742_170 0.142090502 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_000212_460 0.1434187366 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
14 Hb_016734_060 0.1463764543 - - PREDICTED: nucleolar protein 6 [Jatropha curcas]
15 Hb_001999_140 0.1482610345 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_003117_030 0.1493908686 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
17 Hb_001168_050 0.149596036 - - hypothetical protein POPTR_0007s03190g [Populus trichocarpa]
18 Hb_007472_090 0.1498943928 - - unnamed protein product [Coffea canephora]
19 Hb_000035_010 0.1509938496 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
20 Hb_002046_010 0.1510349519 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001098_050 Hb_001098_050 Hb_002908_040 Hb_002908_040 Hb_001098_050--Hb_002908_040 Hb_004724_410 Hb_004724_410 Hb_001098_050--Hb_004724_410 Hb_000197_220 Hb_000197_220 Hb_001098_050--Hb_000197_220 Hb_001223_010 Hb_001223_010 Hb_001098_050--Hb_001223_010 Hb_000215_160 Hb_000215_160 Hb_001098_050--Hb_000215_160 Hb_000950_060 Hb_000950_060 Hb_001098_050--Hb_000950_060 Hb_002908_040--Hb_001223_010 Hb_007472_090 Hb_007472_090 Hb_002908_040--Hb_007472_090 Hb_002639_110 Hb_002639_110 Hb_002908_040--Hb_002639_110 Hb_004306_120 Hb_004306_120 Hb_002908_040--Hb_004306_120 Hb_002805_210 Hb_002805_210 Hb_002908_040--Hb_002805_210 Hb_001691_200 Hb_001691_200 Hb_002908_040--Hb_001691_200 Hb_000025_270 Hb_000025_270 Hb_004724_410--Hb_000025_270 Hb_001623_280 Hb_001623_280 Hb_004724_410--Hb_001623_280 Hb_001348_080 Hb_001348_080 Hb_004724_410--Hb_001348_080 Hb_003020_030 Hb_003020_030 Hb_004724_410--Hb_003020_030 Hb_188281_040 Hb_188281_040 Hb_004724_410--Hb_188281_040 Hb_003292_030 Hb_003292_030 Hb_004724_410--Hb_003292_030 Hb_000914_100 Hb_000914_100 Hb_000197_220--Hb_000914_100 Hb_004785_080 Hb_004785_080 Hb_000197_220--Hb_004785_080 Hb_000896_050 Hb_000896_050 Hb_000197_220--Hb_000896_050 Hb_003106_190 Hb_003106_190 Hb_000197_220--Hb_003106_190 Hb_000010_290 Hb_000010_290 Hb_000197_220--Hb_000010_290 Hb_000589_380 Hb_000589_380 Hb_001223_010--Hb_000589_380 Hb_001223_010--Hb_007472_090 Hb_001223_010--Hb_002639_110 Hb_011485_060 Hb_011485_060 Hb_001223_010--Hb_011485_060 Hb_001726_100 Hb_001726_100 Hb_001223_010--Hb_001726_100 Hb_000215_160--Hb_004724_410 Hb_127552_040 Hb_127552_040 Hb_000215_160--Hb_127552_040 Hb_000215_160--Hb_003292_030 Hb_027792_020 Hb_027792_020 Hb_000215_160--Hb_027792_020 Hb_032876_030 Hb_032876_030 Hb_000215_160--Hb_032876_030 Hb_002639_080 Hb_002639_080 Hb_000950_060--Hb_002639_080 Hb_000035_010 Hb_000035_010 Hb_000950_060--Hb_000035_010 Hb_003913_110 Hb_003913_110 Hb_000950_060--Hb_003913_110 Hb_114151_020 Hb_114151_020 Hb_000950_060--Hb_114151_020 Hb_000175_120 Hb_000175_120 Hb_000950_060--Hb_000175_120 Hb_001341_180 Hb_001341_180 Hb_000950_060--Hb_001341_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.763776 1.13915 1.16601 0.509792 0.958202 1.3992
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.59079 1.08052 0.479245 3.17948 2.53359

CAGE analysis